miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1003 3' -52.7 NC_000924.1 + 14625 0.66 0.845497
Target:  5'- cUUUCCCGGcGAGucuggcuaaCCGGGACCagaacgaACUGa -3'
miRNA:   3'- aAAAGGGCCuUUC---------GGUCUUGGg------UGAC- -5'
1003 3' -52.7 NC_000924.1 + 6256 0.66 0.83651
Target:  5'- gUUUUCCCc--AGGCCAGAGCCUuaGCg- -3'
miRNA:   3'- -AAAAGGGccuUUCGGUCUUGGG--UGac -5'
1003 3' -52.7 NC_000924.1 + 39094 0.67 0.798399
Target:  5'- --cUCgUGGAGAGCCAGGuCCgGCa- -3'
miRNA:   3'- aaaAGgGCCUUUCGGUCUuGGgUGac -5'
1003 3' -52.7 NC_000924.1 + 52234 0.67 0.788384
Target:  5'- uUUUUCUCGGAAAGCaGGGAUgaaUUACUGg -3'
miRNA:   3'- -AAAAGGGCCUUUCGgUCUUG---GGUGAC- -5'
1003 3' -52.7 NC_000924.1 + 38809 0.67 0.778198
Target:  5'- ---gCCCuGcgGGCCcuugAGGGCCCACUGg -3'
miRNA:   3'- aaaaGGGcCuuUCGG----UCUUGGGUGAC- -5'
1003 3' -52.7 NC_000924.1 + 30384 0.67 0.767852
Target:  5'- uUUUUCCCGuGAcAGCUucAGCCCGCUu -3'
miRNA:   3'- -AAAAGGGC-CUuUCGGucUUGGGUGAc -5'
1003 3' -52.7 NC_000924.1 + 38869 0.67 0.757358
Target:  5'- ----aCCGGAGAGCgGGGGCCUAaaGg -3'
miRNA:   3'- aaaagGGCCUUUCGgUCUUGGGUgaC- -5'
1003 3' -52.7 NC_000924.1 + 14714 0.72 0.506855
Target:  5'- --gUCCCGGuuAGCCAGAcucgccgggaaaguuGCCaguaACUGg -3'
miRNA:   3'- aaaAGGGCCuuUCGGUCU---------------UGGg---UGAC- -5'
1003 3' -52.7 NC_000924.1 + 14767 1.07 0.002364
Target:  5'- gUUUCCCGGAAAGCCAGAACCCACUGg -3'
miRNA:   3'- aAAAGGGCCUUUCGGUCUUGGGUGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.