miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1006 3' -57.6 NC_000924.1 + 45335 0.66 0.618401
Target:  5'- gACUGGCGCacgaguggcguuacuGCUGGCauugGCCugaaauucugaccuGUAUCCGg -3'
miRNA:   3'- -UGGCUGCG---------------UGACCGga--CGG--------------UAUAGGC- -5'
1006 3' -57.6 NC_000924.1 + 30613 0.67 0.561577
Target:  5'- aGCgGACGCugaugaauuaucuGCUGGUaugggaaCUGCCGgAUCCGg -3'
miRNA:   3'- -UGgCUGCG-------------UGACCG-------GACGGUaUAGGC- -5'
1006 3' -57.6 NC_000924.1 + 55354 0.68 0.480983
Target:  5'- uGCCcggGAUGCACgccccaUGGCCUGCCugcuuucacGUCCGc -3'
miRNA:   3'- -UGG---CUGCGUG------ACCGGACGGua-------UAGGC- -5'
1006 3' -57.6 NC_000924.1 + 40828 0.7 0.378011
Target:  5'- uCCGcUGUACUGGCggaggaCUGCCAUuUCCGg -3'
miRNA:   3'- uGGCuGCGUGACCG------GACGGUAuAGGC- -5'
1006 3' -57.6 NC_000924.1 + 38110 0.74 0.203822
Target:  5'- uGCCGACGCACUGGUgccgCUGagCGcAUCCGg -3'
miRNA:   3'- -UGGCUGCGUGACCG----GACg-GUaUAGGC- -5'
1006 3' -57.6 NC_000924.1 + 34797 0.75 0.192391
Target:  5'- aACCGGCGCacccgcGCUGGUCUGCUucgugcuuuucuUGUCCGg -3'
miRNA:   3'- -UGGCUGCG------UGACCGGACGGu-----------AUAGGC- -5'
1006 3' -57.6 NC_000924.1 + 24075 1.07 0.000861
Target:  5'- cACCGACGCACUGGCCUGCCAUAUCCGc -3'
miRNA:   3'- -UGGCUGCGUGACCGGACGGUAUAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.