miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1006 5' -48.7 NC_000924.1 + 24487 0.66 0.972223
Target:  5'- aCAgGGAug--GUCAGCCAGUgGCGgCAg -3'
miRNA:   3'- -GUgCCUuaaaUAGUUGGUCG-CGUgGU- -5'
1006 5' -48.7 NC_000924.1 + 61266 0.66 0.972223
Target:  5'- uCugGaGGAUUUGUCAAUCAGCGgAa-- -3'
miRNA:   3'- -GugC-CUUAAAUAGUUGGUCGCgUggu -5'
1006 5' -48.7 NC_000924.1 + 53680 0.66 0.968976
Target:  5'- cCAUGGAGcaugUUGUCAcACCAGCGgaaUAUCAg -3'
miRNA:   3'- -GUGCCUUa---AAUAGU-UGGUCGC---GUGGU- -5'
1006 5' -48.7 NC_000924.1 + 54292 0.66 0.967951
Target:  5'- uCGCGGGAaauaaccagcggCAAauCCGGUGCACCAa -3'
miRNA:   3'- -GUGCCUUaaaua-------GUU--GGUCGCGUGGU- -5'
1006 5' -48.7 NC_000924.1 + 25419 0.66 0.965466
Target:  5'- aGCGGcccuUUUGUCAAUCuGUcuGCGCCAg -3'
miRNA:   3'- gUGCCuu--AAAUAGUUGGuCG--CGUGGU- -5'
1006 5' -48.7 NC_000924.1 + 24965 0.67 0.961687
Target:  5'- aGCGGAA------AGCCAGCGUauGCCAu -3'
miRNA:   3'- gUGCCUUaaauagUUGGUCGCG--UGGU- -5'
1006 5' -48.7 NC_000924.1 + 54784 0.67 0.961687
Target:  5'- -cUGGAAUUUAUCcugcauCUGGCGCACa- -3'
miRNA:   3'- guGCCUUAAAUAGuu----GGUCGCGUGgu -5'
1006 5' -48.7 NC_000924.1 + 21891 0.67 0.961687
Target:  5'- uCAUGGAAaccgUUGUCAcACCGG-GCACUg -3'
miRNA:   3'- -GUGCCUUa---AAUAGU-UGGUCgCGUGGu -5'
1006 5' -48.7 NC_000924.1 + 48332 0.67 0.953289
Target:  5'- --aGGAuuggcagUAUCGuACCAGCGCAgCAg -3'
miRNA:   3'- gugCCUuaa----AUAGU-UGGUCGCGUgGU- -5'
1006 5' -48.7 NC_000924.1 + 31044 0.68 0.938507
Target:  5'- gACGGG--UUGUCAGCCagccaaggcggGGCGUAUCGu -3'
miRNA:   3'- gUGCCUuaAAUAGUUGG-----------UCGCGUGGU- -5'
1006 5' -48.7 NC_000924.1 + 16643 0.68 0.938507
Target:  5'- gACGGuggcgUUGUCAugcuugGCguGCGUACCAg -3'
miRNA:   3'- gUGCCuua--AAUAGU------UGguCGCGUGGU- -5'
1006 5' -48.7 NC_000924.1 + 24008 0.68 0.938507
Target:  5'- uGCGGcgug-AUUuACCGGCGUACCGc -3'
miRNA:   3'- gUGCCuuaaaUAGuUGGUCGCGUGGU- -5'
1006 5' -48.7 NC_000924.1 + 57833 0.72 0.785074
Target:  5'- gACGGggUUUua----CAGCGCACCGg -3'
miRNA:   3'- gUGCCuuAAAuaguugGUCGCGUGGU- -5'
1006 5' -48.7 NC_000924.1 + 52936 0.73 0.73138
Target:  5'- aAUGGAAccauUCGugcGCCAGCGCACCc -3'
miRNA:   3'- gUGCCUUaaauAGU---UGGUCGCGUGGu -5'
1006 5' -48.7 NC_000924.1 + 27693 0.75 0.6059
Target:  5'- uCACGGuaauGGUUUGUugcCAGCCacAGCGCACCAu -3'
miRNA:   3'- -GUGCC----UUAAAUA---GUUGG--UCGCGUGGU- -5'
1006 5' -48.7 NC_000924.1 + 34805 0.75 0.594413
Target:  5'- aUACGGA------CAACCGGCGCACCc -3'
miRNA:   3'- -GUGCCUuaaauaGUUGGUCGCGUGGu -5'
1006 5' -48.7 NC_000924.1 + 24040 1.1 0.004652
Target:  5'- gCACGGAAUUUAUCAACCAGCGCACCAa -3'
miRNA:   3'- -GUGCCUUAAAUAGUUGGUCGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.