miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
101 5' -57.9 AC_000006.1 + 13603 1.06 0.00044
Target:  5'- gGUCGCCUGCGCCAUCACGCUCUCGUAc -3'
miRNA:   3'- -CAGCGGACGCGGUAGUGCGAGAGCAU- -5'
101 5' -57.9 AC_000006.1 + 6880 0.68 0.327099
Target:  5'- -aCuaCUGCGCCAUgGaCGUUCUCGUc -3'
miRNA:   3'- caGcgGACGCGGUAgU-GCGAGAGCAu -5'
101 5' -57.9 AC_000006.1 + 12171 0.67 0.343813
Target:  5'- cUCGCgCUGCGCCAcggcuUCGCGCcgUC-CGUc -3'
miRNA:   3'- cAGCG-GACGCGGU-----AGUGCG--AGaGCAu -5'
101 5' -57.9 AC_000006.1 + 8481 0.66 0.407024
Target:  5'- -cCGCC-GCGUCGUCgcgcacgccaGCGCUCUCa-- -3'
miRNA:   3'- caGCGGaCGCGGUAG----------UGCGAGAGcau -5'
101 5' -57.9 AC_000006.1 + 9769 0.66 0.415665
Target:  5'- cUCGCCgagcGCGUCGUCGCcgaccugGCgCUCGUGc -3'
miRNA:   3'- cAGCGGa---CGCGGUAGUG-------CGaGAGCAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.