Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 33739 | 0.66 | 0.998321 |
|
Target: 5'- aGGACGUgaaggagCCGGAAGCGAAGGGg -3' miRNA: 3'- -CUUGCGaaugga-GGCCUUUGUUUUUU- -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 18358 | 0.67 | 0.997072 |
|
Target: 5'- aAACGCcaaaaUACUgaggCCGGAAGCGGGGAu -3' miRNA: 3'- cUUGCGa----AUGGa---GGCCUUUGUUUUUu -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 57034 | 0.67 | 0.996471 |
|
Target: 5'- aAGCGCccugucCCUCCGGAGAUAu---- -3' miRNA: 3'- cUUGCGaau---GGAGGCCUUUGUuuuuu -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 56354 | 0.68 | 0.9904 |
|
Target: 5'- -cGCGCUUGCCgcugUGGGAGCAGGu-- -3' miRNA: 3'- cuUGCGAAUGGag--GCCUUUGUUUuuu -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 13290 | 0.69 | 0.987138 |
|
Target: 5'- cAACGCUUACCcagCgCGGucuGGCAAAGAu -3' miRNA: 3'- cUUGCGAAUGGa--G-GCCu--UUGUUUUUu -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 24051 | 0.7 | 0.972177 |
|
Target: 5'- cGACGU--AUUUCUGGAAGCAGAAGAa -3' miRNA: 3'- cUUGCGaaUGGAGGCCUUUGUUUUUU- -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 46047 | 0.71 | 0.956936 |
|
Target: 5'- uGAGCGU-UACCUgCCGGAggUGAAGAc -3' miRNA: 3'- -CUUGCGaAUGGA-GGCCUuuGUUUUUu -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 24732 | 0.71 | 0.952378 |
|
Target: 5'- aGGGCGUUgcCCUgaCCGGAGACGGGGGGa -3' miRNA: 3'- -CUUGCGAauGGA--GGCCUUUGUUUUUU- -5' |
|||||||
| 1012 | 5' | -44.9 | NC_000924.1 | + | 33505 | 1.07 | 0.017162 |
|
Target: 5'- gGAACGCUUACCUCCGGAAACAAAAAAc -3' miRNA: 3'- -CUUGCGAAUGGAGGCCUUUGUUUUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home