miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1013 3' -48.4 NC_000924.1 + 29785 0.66 0.982256
Target:  5'- uGCUCcggaacaACUGGCgcugCGCCGGucgcauucugaAGGUGACCa -3'
miRNA:   3'- -UGAG-------UGACUGaa--GUGGCU-----------UUCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 49519 0.66 0.977622
Target:  5'- -aUCACUGACagccUUACCGGuuGCcuucaGACCu -3'
miRNA:   3'- ugAGUGACUGa---AGUGGCUuuCG-----UUGG- -5'
1013 3' -48.4 NC_000924.1 + 19950 0.66 0.974851
Target:  5'- -aUCGCUgGACUUCGaaGAAugcagGGCGAUCa -3'
miRNA:   3'- ugAGUGA-CUGAAGUggCUU-----UCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 49405 0.67 0.96505
Target:  5'- -gUUACUGAUauugUCGguaaagguCUGAAGGCAACCg -3'
miRNA:   3'- ugAGUGACUGa---AGU--------GGCUUUCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 24495 0.67 0.961257
Target:  5'- cGC-CugUGGCUUCugcACCGgAAGGCGAUg -3'
miRNA:   3'- -UGaGugACUGAAG---UGGC-UUUCGUUGg -5'
1013 3' -48.4 NC_000924.1 + 31206 0.68 0.938039
Target:  5'- aGCUCAUgaGCUgaUCAUC-AAAGCAGCCu -3'
miRNA:   3'- -UGAGUGacUGA--AGUGGcUUUCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 46783 0.68 0.938039
Target:  5'- cCUU-CUGACcagaACCGAGAGCAGCa -3'
miRNA:   3'- uGAGuGACUGaag-UGGCUUUCGUUGg -5'
1013 3' -48.4 NC_000924.1 + 16938 0.69 0.926686
Target:  5'- cGCUCACUGGCUa-ACUGAGGuCGACg -3'
miRNA:   3'- -UGAGUGACUGAagUGGCUUUcGUUGg -5'
1013 3' -48.4 NC_000924.1 + 18987 0.69 0.926686
Target:  5'- gAC-CGCUGGCgagaACuCGAAggGGCAACCg -3'
miRNA:   3'- -UGaGUGACUGaag-UG-GCUU--UCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 49849 0.7 0.885467
Target:  5'- uACUCugaGCUGGCgcagUCACCGAAauuucAGCAGa- -3'
miRNA:   3'- -UGAG---UGACUGa---AGUGGCUU-----UCGUUgg -5'
1013 3' -48.4 NC_000924.1 + 2057 0.7 0.885467
Target:  5'- uGCUCACUGugUggcggaaaUCAUgGcAAAGCcGCCa -3'
miRNA:   3'- -UGAGUGACugA--------AGUGgC-UUUCGuUGG- -5'
1013 3' -48.4 NC_000924.1 + 37998 0.71 0.823832
Target:  5'- gACggCGCUGACaguUUCACCGGAugcgcucAGCGGCa -3'
miRNA:   3'- -UGa-GUGACUG---AAGUGGCUU-------UCGUUGg -5'
1013 3' -48.4 NC_000924.1 + 38527 0.73 0.753406
Target:  5'- cGCUgCugUGACUgCACgGGucGCAGCCu -3'
miRNA:   3'- -UGA-GugACUGAaGUGgCUuuCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 25446 0.75 0.664039
Target:  5'- gGCUgACUGACUggCGCUGAuuuucucAGCGGCCc -3'
miRNA:   3'- -UGAgUGACUGAa-GUGGCUu------UCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 34239 0.76 0.5612
Target:  5'- cGCUCACUGAacgUUUCGCUG-AAGUGGCCc -3'
miRNA:   3'- -UGAGUGACU---GAAGUGGCuUUCGUUGG- -5'
1013 3' -48.4 NC_000924.1 + 34366 1.13 0.003185
Target:  5'- gACUCACUGACUUCACCGAAAGCAACCu -3'
miRNA:   3'- -UGAGUGACUGAAGUGGCUUUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.