miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1014 3' -58.1 NC_000924.1 + 35298 0.66 0.625103
Target:  5'- gUCCUGuACGuCACGCCGcgucaguggaAUGACUGGUa -3'
miRNA:   3'- -AGGGC-UGCcGUGUGGU----------UGCUGACCGc -5'
1014 3' -58.1 NC_000924.1 + 5784 0.66 0.625103
Target:  5'- cCCUGAaaGCACA---GCGGCUGGCu -3'
miRNA:   3'- aGGGCUgcCGUGUgguUGCUGACCGc -5'
1014 3' -58.1 NC_000924.1 + 43526 0.66 0.625103
Target:  5'- uUUCCGuucugaauaACGGCACuCCGGauaACUGGCGa -3'
miRNA:   3'- -AGGGC---------UGCCGUGuGGUUgc-UGACCGC- -5'
1014 3' -58.1 NC_000924.1 + 26225 0.66 0.624039
Target:  5'- aCCCGcaccaucACGGUAUGCUGugGugUGGUu -3'
miRNA:   3'- aGGGC-------UGCCGUGUGGUugCugACCGc -5'
1014 3' -58.1 NC_000924.1 + 30221 0.66 0.603845
Target:  5'- -gCUGACGGCACAggauuauaaauuCCAuuuuuACGcCUGGUGg -3'
miRNA:   3'- agGGCUGCCGUGU------------GGU-----UGCuGACCGC- -5'
1014 3' -58.1 NC_000924.1 + 26506 0.66 0.603845
Target:  5'- aUCCCGuCGugaccaggagaGCGCGCUGGCGuGCUGGgGa -3'
miRNA:   3'- -AGGGCuGC-----------CGUGUGGUUGC-UGACCgC- -5'
1014 3' -58.1 NC_000924.1 + 15080 0.66 0.597483
Target:  5'- uUCCUgucaugGGCGGCAgACCucuaaaucguguucaGGCG-CUGGCGa -3'
miRNA:   3'- -AGGG------CUGCCGUgUGG---------------UUGCuGACCGC- -5'
1014 3' -58.1 NC_000924.1 + 6214 0.67 0.572149
Target:  5'- cUCCCGAUGGUuuauGCAgUGACGGCaacGGCc -3'
miRNA:   3'- -AGGGCUGCCG----UGUgGUUGCUGa--CCGc -5'
1014 3' -58.1 NC_000924.1 + 3711 0.67 0.561665
Target:  5'- -gCUGGCugugcaaaagaGGCGCGCaagGAUGGCUGGCGa -3'
miRNA:   3'- agGGCUG-----------CCGUGUGg--UUGCUGACCGC- -5'
1014 3' -58.1 NC_000924.1 + 23982 0.67 0.540862
Target:  5'- aCCUGGCggauauGGCAgGCCAguGCGucgguggcucuGCUGGCGg -3'
miRNA:   3'- aGGGCUG------CCGUgUGGU--UGC-----------UGACCGC- -5'
1014 3' -58.1 NC_000924.1 + 31828 0.68 0.487142
Target:  5'- uUCCCGGgaaUGGCucagguuaucgauuAUGCCAuugAUGACUGGCGu -3'
miRNA:   3'- -AGGGCU---GCCG--------------UGUGGU---UGCUGACCGC- -5'
1014 3' -58.1 NC_000924.1 + 23754 0.69 0.460755
Target:  5'- -gCCGAUGGCACAUaCAgugacGCGAgUGGUGc -3'
miRNA:   3'- agGGCUGCCGUGUG-GU-----UGCUgACCGC- -5'
1014 3' -58.1 NC_000924.1 + 27580 0.75 0.19084
Target:  5'- gUCCUGGCGGUugGCUAugGugcgcugugGCUGGCa -3'
miRNA:   3'- -AGGGCUGCCGugUGGUugC---------UGACCGc -5'
1014 3' -58.1 NC_000924.1 + 36910 1.09 0.000632
Target:  5'- cUCCCGACGGCACACCAACGACUGGCGg -3'
miRNA:   3'- -AGGGCUGCCGUGUGGUUGCUGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.