miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1014 5' -54.6 NC_000924.1 + 55235 0.66 0.75789
Target:  5'- aACGGUAGgCGUucUGcCAG-GCAUCCa -3'
miRNA:   3'- gUGCCGUCgGUA--ACuGUCuCGUAGGc -5'
1014 5' -54.6 NC_000924.1 + 17288 0.66 0.73699
Target:  5'- aGCGGCauugauGGCgAUcgGGCAGGGCGUCa- -3'
miRNA:   3'- gUGCCG------UCGgUAa-CUGUCUCGUAGgc -5'
1014 5' -54.6 NC_000924.1 + 35741 0.66 0.735933
Target:  5'- uCACGGCGugauuGCCGUUGAUAcAGCAgugaagcUCUGa -3'
miRNA:   3'- -GUGCCGU-----CGGUAACUGUcUCGU-------AGGC- -5'
1014 5' -54.6 NC_000924.1 + 26123 0.67 0.7027
Target:  5'- aACGGCAGCCGauaaaccauaGCGGAGUuUCCu -3'
miRNA:   3'- gUGCCGUCGGUaac-------UGUCUCGuAGGc -5'
1014 5' -54.6 NC_000924.1 + 6929 0.69 0.57285
Target:  5'- uCACGG-GGCCG-UGGCAGucGCAUCCc -3'
miRNA:   3'- -GUGCCgUCGGUaACUGUCu-CGUAGGc -5'
1014 5' -54.6 NC_000924.1 + 39572 0.7 0.518985
Target:  5'- uGCGGCAgGCCcg-GugGGGGCGaCCGg -3'
miRNA:   3'- gUGCCGU-CGGuaaCugUCUCGUaGGC- -5'
1014 5' -54.6 NC_000924.1 + 47584 0.71 0.467235
Target:  5'- gGgGGCGGCUAUUGGC---GCAUCCGu -3'
miRNA:   3'- gUgCCGUCGGUAACUGucuCGUAGGC- -5'
1014 5' -54.6 NC_000924.1 + 36875 1.08 0.001362
Target:  5'- cCACGGCAGCCAUUGACAGAGCAUCCGu -3'
miRNA:   3'- -GUGCCGUCGGUAACUGUCUCGUAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.