miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1017 5' -52.5 NC_000924.1 + 48748 0.66 0.881568
Target:  5'- --aUGCGGuugugaaccaGUCGCAgcauaauauucaUCCACCGCAgCCu -3'
miRNA:   3'- cugACGCC----------UAGUGU------------AGGUGGUGUaGG- -5'
1017 5' -52.5 NC_000924.1 + 55410 0.66 0.873789
Target:  5'- cGAUgGCGGAUCAgCgAUUCGCuCAgGUCCu -3'
miRNA:   3'- -CUGaCGCCUAGU-G-UAGGUG-GUgUAGG- -5'
1017 5' -52.5 NC_000924.1 + 49976 0.66 0.85747
Target:  5'- uGCUGCGGGUCGgCGUCaauggACaaaaACGUCUg -3'
miRNA:   3'- cUGACGCCUAGU-GUAGg----UGg---UGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 625 0.67 0.848945
Target:  5'- --gUGCGGcaauuucaccguGUCGCAUCCcuguaaaaacaGCCACuGUCCa -3'
miRNA:   3'- cugACGCC------------UAGUGUAGG-----------UGGUG-UAGG- -5'
1017 5' -52.5 NC_000924.1 + 11735 0.67 0.831205
Target:  5'- uACUGauGccauuUCAUAUCCuuCCGCAUCCa -3'
miRNA:   3'- cUGACgcCu----AGUGUAGGu-GGUGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 51540 0.67 0.822008
Target:  5'- --gUGCuG-UCGCGUUCugCGCAUCCg -3'
miRNA:   3'- cugACGcCuAGUGUAGGugGUGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 43642 0.68 0.803013
Target:  5'- cAUUGCGGAUCACcaGUCC--UACAUUCu -3'
miRNA:   3'- cUGACGCCUAGUG--UAGGugGUGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 54467 0.68 0.801072
Target:  5'- cGCUGacaccacCGGAUCACcauuuuuAUCCACgGCAUCa -3'
miRNA:   3'- cUGAC-------GCCUAGUG-------UAGGUGgUGUAGg -5'
1017 5' -52.5 NC_000924.1 + 14350 0.68 0.783285
Target:  5'- ---cGCGGugGUUACGUCCGUCACGUUCa -3'
miRNA:   3'- cugaCGCC--UAGUGUAGGUGGUGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 50375 0.69 0.741995
Target:  5'- -uCUGCGGccUgACGUCUGCCACGauaUCCg -3'
miRNA:   3'- cuGACGCCu-AgUGUAGGUGGUGU---AGG- -5'
1017 5' -52.5 NC_000924.1 + 51400 0.7 0.643591
Target:  5'- -gUUGUGGuaaaACGaCCACCACGUCCg -3'
miRNA:   3'- cuGACGCCuag-UGUaGGUGGUGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 27825 0.73 0.511993
Target:  5'- -cCUGCGGAUCAacgCCACCuGC-UCCg -3'
miRNA:   3'- cuGACGCCUAGUguaGGUGG-UGuAGG- -5'
1017 5' -52.5 NC_000924.1 + 34994 0.73 0.511993
Target:  5'- cGCUGCuGAcucaUACGUCCGCCuGCAUCCa -3'
miRNA:   3'- cUGACGcCUa---GUGUAGGUGG-UGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 50550 0.73 0.470385
Target:  5'- aGCUGCGGAugcgUCACccUCUguuGCCAUAUCCg -3'
miRNA:   3'- cUGACGCCU----AGUGu-AGG---UGGUGUAGG- -5'
1017 5' -52.5 NC_000924.1 + 41054 1.13 0.001206
Target:  5'- gGACUGCGGAUCACAUCCACCACAUCCg -3'
miRNA:   3'- -CUGACGCCUAGUGUAGGUGGUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.