miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
102 5' -60.9 AC_000006.1 + 3599 0.71 0.132613
Target:  5'- cGUGggGaacUCgucgcuugacagCACCgCCGCAGCCgCGGCAg -3'
miRNA:   3'- aCACuuC---AG------------GUGG-GGCGUCGG-GCCGU- -5'
102 5' -60.9 AC_000006.1 + 6520 0.69 0.179079
Target:  5'- cGUGggGUCCGCCCCucaaccccuacgaGCGagcaauggccGCCCgcgaguGGCAg -3'
miRNA:   3'- aCACuuCAGGUGGGG-------------CGU----------CGGG------CCGU- -5'
102 5' -60.9 AC_000006.1 + 13391 0.71 0.131139
Target:  5'- gGUGggGUCaacccgauaucgcgCAUCCUGCAGCCCaaacuggGGCGa -3'
miRNA:   3'- aCACuuCAG--------------GUGGGGCGUCGGG-------CCGU- -5'
102 5' -60.9 AC_000006.1 + 14269 1.08 0.000166
Target:  5'- cUGUGAAGUCCACCCCGCAGCCCGGCAg -3'
miRNA:   3'- -ACACUUCAGGUGGGGCGUCGGGCCGU- -5'
102 5' -60.9 AC_000006.1 + 15821 0.67 0.253512
Target:  5'- uUGUGcgcGAGUUCGCUCCGCGGC--GGCGc -3'
miRNA:   3'- -ACAC---UUCAGGUGGGGCGUCGggCCGU- -5'
102 5' -60.9 AC_000006.1 + 16344 0.66 0.287301
Target:  5'- -cUGAAuGUCCACggUCUGCacgcccaGGCCCGGCGc -3'
miRNA:   3'- acACUU-CAGGUG--GGGCG-------UCGGGCCGU- -5'
102 5' -60.9 AC_000006.1 + 22734 0.68 0.210988
Target:  5'- --aGAGGccacUCCGCCCCGgGGCCaCGGg- -3'
miRNA:   3'- acaCUUC----AGGUGGGGCgUCGG-GCCgu -5'
102 5' -60.9 AC_000006.1 + 24874 0.76 0.057842
Target:  5'- ------aUCCGCgCCGCAGCCCGGCGg -3'
miRNA:   3'- acacuucAGGUGgGGCGUCGGGCCGU- -5'
102 5' -60.9 AC_000006.1 + 25567 0.68 0.222471
Target:  5'- gGUGGaguAGUCCugggagGCgCCCGCGGCCaGGCc -3'
miRNA:   3'- aCACU---UCAGG------UG-GGGCGUCGGgCCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.