miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1020 5' -56.3 NC_000924.1 + 16402 0.66 0.684384
Target:  5'- uUCAGCCGccgCAGCaacuGAu-GGUGCCCAUg -3'
miRNA:   3'- -GGUCGGUa--GUCGg---CUuuCCGUGGGUG- -5'
1020 5' -56.3 NC_000924.1 + 48349 0.66 0.673555
Target:  5'- aCCAGCg--CAGCagGAAGGGUACgUACu -3'
miRNA:   3'- -GGUCGguaGUCGg-CUUUCCGUGgGUG- -5'
1020 5' -56.3 NC_000924.1 + 17582 0.66 0.65179
Target:  5'- -aGGCCAaaGGCgGuAAGGCACgCGCg -3'
miRNA:   3'- ggUCGGUagUCGgCuUUCCGUGgGUG- -5'
1020 5' -56.3 NC_000924.1 + 31861 0.66 0.6507
Target:  5'- uCCAGCggcgacgCAUCAGCC-AucGGCAgUCACu -3'
miRNA:   3'- -GGUCG-------GUAGUCGGcUuuCCGUgGGUG- -5'
1020 5' -56.3 NC_000924.1 + 23349 0.66 0.640877
Target:  5'- aCCAGCUgucgaaAUCAGCgCacuaccauAAGGCugCCACc -3'
miRNA:   3'- -GGUCGG------UAGUCG-Gcu------UUCCGugGGUG- -5'
1020 5' -56.3 NC_000924.1 + 19146 0.67 0.615761
Target:  5'- uUCAGCCuucuggucuucaagGUCGGCCGcAAGGCGCa--- -3'
miRNA:   3'- -GGUCGG--------------UAGUCGGCuUUCCGUGggug -5'
1020 5' -56.3 NC_000924.1 + 26854 0.67 0.608127
Target:  5'- aCAGgaAUcCAGCCcacaGAAAGGCACCgACa -3'
miRNA:   3'- gGUCggUA-GUCGG----CUUUCCGUGGgUG- -5'
1020 5' -56.3 NC_000924.1 + 50484 0.67 0.597238
Target:  5'- gCAGCuCAUC-GCCGGGAaGCugCCAg -3'
miRNA:   3'- gGUCG-GUAGuCGGCUUUcCGugGGUg -5'
1020 5' -56.3 NC_000924.1 + 49600 0.67 0.586379
Target:  5'- uUCGGUCAUCGGCguauucagcgcaCGAAcuGCACCCGg -3'
miRNA:   3'- -GGUCGGUAGUCG------------GCUUucCGUGGGUg -5'
1020 5' -56.3 NC_000924.1 + 45780 0.71 0.371791
Target:  5'- cCCcGUCAacugguugcugagguUCAGCCGAuauGGCACCCGu -3'
miRNA:   3'- -GGuCGGU---------------AGUCGGCUuu-CCGUGGGUg -5'
1020 5' -56.3 NC_000924.1 + 39594 0.73 0.311462
Target:  5'- aCCGGaCC-UCaggGGCCGAAGGGCgACCCGg -3'
miRNA:   3'- -GGUC-GGuAG---UCGGCUUUCCG-UGGGUg -5'
1020 5' -56.3 NC_000924.1 + 25371 0.74 0.242186
Target:  5'- gCCAGUCAgUCAGCCGGAAGcaaACCCGa -3'
miRNA:   3'- -GGUCGGU-AGUCGGCUUUCcg-UGGGUg -5'
1020 5' -56.3 NC_000924.1 + 22865 0.76 0.186231
Target:  5'- aCCAgGCCGaacUCA-CCGGGAGGCACCCGg -3'
miRNA:   3'- -GGU-CGGU---AGUcGGCUUUCCGUGGGUg -5'
1020 5' -56.3 NC_000924.1 + 45551 1.12 0.000543
Target:  5'- uCCAGCCAUCAGCCGAAAGGCACCCACg -3'
miRNA:   3'- -GGUCGGUAGUCGGCUUUCCGUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.