miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10200 3' -47.5 NC_002665.1 + 7027 0.67 0.995046
Target:  5'- aGGAGACC-UGAAUGUauauaauucauacuAUCUCCaaCAUGg -3'
miRNA:   3'- gUCUUUGGuACUUACG--------------UAGAGG--GUAC- -5'
10200 3' -47.5 NC_002665.1 + 13157 1.1 0.010459
Target:  5'- uCAGAAACCAUGAAUGCAUCUCCCAUGg -3'
miRNA:   3'- -GUCUUUGGUACUUACGUAGAGGGUAC- -5'
10200 3' -47.5 NC_002665.1 + 47602 0.66 0.998685
Target:  5'- -uGGAACCAa-----CAUCUCCCAUGg -3'
miRNA:   3'- guCUUUGGUacuuacGUAGAGGGUAC- -5'
10200 3' -47.5 NC_002665.1 + 66619 0.66 0.998685
Target:  5'- -uGAAGCC-UGGAggguaaCAUCUUCCAUGg -3'
miRNA:   3'- guCUUUGGuACUUac----GUAGAGGGUAC- -5'
10200 3' -47.5 NC_002665.1 + 66905 0.66 0.998297
Target:  5'- gGGAAGCCAUGAuaggggccgcgacuGcUGCAUUgacuUCCCAg- -3'
miRNA:   3'- gUCUUUGGUACU--------------U-ACGUAG----AGGGUac -5'
10200 3' -47.5 NC_002665.1 + 74593 0.68 0.991264
Target:  5'- aCAGAGAUa---GAUGCGUCUCCUAg- -3'
miRNA:   3'- -GUCUUUGguacUUACGUAGAGGGUac -5'
10200 3' -47.5 NC_002665.1 + 101958 0.81 0.520524
Target:  5'- aGGGAAUU-UGAGUGUAUCUCCCAUGa -3'
miRNA:   3'- gUCUUUGGuACUUACGUAGAGGGUAC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.