Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10200 | 5' | -48.9 | NC_002665.1 | + | 3718 | 0.66 | 0.992648 |
Target: 5'- uUUAUAGGg--CCCAUGuggacacauuGAUGGCUGg -3' miRNA: 3'- cGGUGUCCaaaGGGUAU----------UUACCGACg -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 10097 | 0.7 | 0.937684 |
Target: 5'- gGCCACGGGUguggCCAc--GUGGgUGCa -3' miRNA: 3'- -CGGUGUCCAaag-GGUauuUACCgACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 13122 | 1.14 | 0.004329 |
Target: 5'- uGCCACAGGUUUCCCAUAAAUGGCUGCc -3' miRNA: 3'- -CGGUGUCCAAAGGGUAUUUACCGACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 22413 | 0.75 | 0.771591 |
Target: 5'- aGCUAUAGGUUUa-CAUAuuGUGGCUGUg -3' miRNA: 3'- -CGGUGUCCAAAggGUAUu-UACCGACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 36872 | 0.66 | 0.996075 |
Target: 5'- gGCCAgGGGcugugguauaUUUCCCAccauaguccuaUGGGUGGCcaUGUa -3' miRNA: 3'- -CGGUgUCC----------AAAGGGU-----------AUUUACCG--ACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 52510 | 0.67 | 0.985409 |
Target: 5'- gGUCAauaAGGaugCCUuaugGAAUGGCUGCu -3' miRNA: 3'- -CGGUg--UCCaaaGGGua--UUUACCGACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 64274 | 0.66 | 0.993671 |
Target: 5'- aGCCAUuuuuuGGUgcagaCCCGUGGA-GGCaGCa -3' miRNA: 3'- -CGGUGu----CCAaa---GGGUAUUUaCCGaCG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 64343 | 0.67 | 0.987175 |
Target: 5'- aGUUACaAGGUUUga-GUAGAUGGUUGCa -3' miRNA: 3'- -CGGUG-UCCAAAgggUAUUUACCGACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 66903 | 0.71 | 0.914665 |
Target: 5'- gGCUucCAGGUcUUCCAUGGuUGGCUGg -3' miRNA: 3'- -CGGu-GUCCAaAGGGUAUUuACCGACg -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 74240 | 0.69 | 0.966104 |
Target: 5'- gGCCAUAGccccacacaCCAUGGA-GGCUGCg -3' miRNA: 3'- -CGGUGUCcaaag----GGUAUUUaCCGACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 77523 | 0.68 | 0.981328 |
Target: 5'- -aCACAauGGcc-CCCAacAAUGGCUGCa -3' miRNA: 3'- cgGUGU--CCaaaGGGUauUUACCGACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 91464 | 0.66 | 0.996075 |
Target: 5'- uGCCACAGGgga-CUGUAuuUGcucucuGCUGCa -3' miRNA: 3'- -CGGUGUCCaaagGGUAUuuAC------CGACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 101737 | 0.68 | 0.983464 |
Target: 5'- aUguCAGGgagUUCCUAUAgauGAUGGuCUGCu -3' miRNA: 3'- cGguGUCCa--AAGGGUAU---UUACC-GACG- -5' |
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10200 | 5' | -48.9 | NC_002665.1 | + | 108648 | 0.68 | 0.973684 |
Target: 5'- cCCACAGugcagcucaaaGUUcagUCCCAUAGAUGGCc-- -3' miRNA: 3'- cGGUGUC-----------CAA---AGGGUAUUUACCGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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