miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10200 5' -48.9 NC_002665.1 + 3718 0.66 0.992648
Target:  5'- uUUAUAGGg--CCCAUGuggacacauuGAUGGCUGg -3'
miRNA:   3'- cGGUGUCCaaaGGGUAU----------UUACCGACg -5'
10200 5' -48.9 NC_002665.1 + 10097 0.7 0.937684
Target:  5'- gGCCACGGGUguggCCAc--GUGGgUGCa -3'
miRNA:   3'- -CGGUGUCCAaag-GGUauuUACCgACG- -5'
10200 5' -48.9 NC_002665.1 + 13122 1.14 0.004329
Target:  5'- uGCCACAGGUUUCCCAUAAAUGGCUGCc -3'
miRNA:   3'- -CGGUGUCCAAAGGGUAUUUACCGACG- -5'
10200 5' -48.9 NC_002665.1 + 22413 0.75 0.771591
Target:  5'- aGCUAUAGGUUUa-CAUAuuGUGGCUGUg -3'
miRNA:   3'- -CGGUGUCCAAAggGUAUu-UACCGACG- -5'
10200 5' -48.9 NC_002665.1 + 36872 0.66 0.996075
Target:  5'- gGCCAgGGGcugugguauaUUUCCCAccauaguccuaUGGGUGGCcaUGUa -3'
miRNA:   3'- -CGGUgUCC----------AAAGGGU-----------AUUUACCG--ACG- -5'
10200 5' -48.9 NC_002665.1 + 52510 0.67 0.985409
Target:  5'- gGUCAauaAGGaugCCUuaugGAAUGGCUGCu -3'
miRNA:   3'- -CGGUg--UCCaaaGGGua--UUUACCGACG- -5'
10200 5' -48.9 NC_002665.1 + 64274 0.66 0.993671
Target:  5'- aGCCAUuuuuuGGUgcagaCCCGUGGA-GGCaGCa -3'
miRNA:   3'- -CGGUGu----CCAaa---GGGUAUUUaCCGaCG- -5'
10200 5' -48.9 NC_002665.1 + 64343 0.67 0.987175
Target:  5'- aGUUACaAGGUUUga-GUAGAUGGUUGCa -3'
miRNA:   3'- -CGGUG-UCCAAAgggUAUUUACCGACG- -5'
10200 5' -48.9 NC_002665.1 + 66903 0.71 0.914665
Target:  5'- gGCUucCAGGUcUUCCAUGGuUGGCUGg -3'
miRNA:   3'- -CGGu-GUCCAaAGGGUAUUuACCGACg -5'
10200 5' -48.9 NC_002665.1 + 74240 0.69 0.966104
Target:  5'- gGCCAUAGccccacacaCCAUGGA-GGCUGCg -3'
miRNA:   3'- -CGGUGUCcaaag----GGUAUUUaCCGACG- -5'
10200 5' -48.9 NC_002665.1 + 77523 0.68 0.981328
Target:  5'- -aCACAauGGcc-CCCAacAAUGGCUGCa -3'
miRNA:   3'- cgGUGU--CCaaaGGGUauUUACCGACG- -5'
10200 5' -48.9 NC_002665.1 + 91464 0.66 0.996075
Target:  5'- uGCCACAGGgga-CUGUAuuUGcucucuGCUGCa -3'
miRNA:   3'- -CGGUGUCCaaagGGUAUuuAC------CGACG- -5'
10200 5' -48.9 NC_002665.1 + 101737 0.68 0.983464
Target:  5'- aUguCAGGgagUUCCUAUAgauGAUGGuCUGCu -3'
miRNA:   3'- cGguGUCCa--AAGGGUAU---UUACC-GACG- -5'
10200 5' -48.9 NC_002665.1 + 108648 0.68 0.973684
Target:  5'- cCCACAGugcagcucaaaGUUcagUCCCAUAGAUGGCc-- -3'
miRNA:   3'- cGGUGUC-----------CAA---AGGGUAUUUACCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.