miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10201 3' -48.9 NC_002665.1 + 14563 0.66 0.994073
Target:  5'- gGGAAGAcCCAGGACGgugcgAGuGuCUGuGUCa -3'
miRNA:   3'- -UCUUCUaGGUCCUGU-----UC-CuGACuUAG- -5'
10201 3' -48.9 NC_002665.1 + 13930 0.66 0.993098
Target:  5'- -----cUCCGGG-UAGGGGCUGAAUg -3'
miRNA:   3'- ucuucuAGGUCCuGUUCCUGACUUAg -5'
10201 3' -48.9 NC_002665.1 + 4560 0.67 0.990765
Target:  5'- --uGGAUCUGGGugGGGGGgUGGAg- -3'
miRNA:   3'- ucuUCUAGGUCCugUUCCUgACUUag -5'
10201 3' -48.9 NC_002665.1 + 89189 0.67 0.990765
Target:  5'- gGGggGGUuuGGGACuggguGGGGGCcacgGggUCu -3'
miRNA:   3'- -UCuuCUAggUCCUG-----UUCCUGa---CuuAG- -5'
10201 3' -48.9 NC_002665.1 + 108583 0.67 0.987854
Target:  5'- -uGGGGUggGGGACGAGGGCUgugGAAUCc -3'
miRNA:   3'- ucUUCUAggUCCUGUUCCUGA---CUUAG- -5'
10201 3' -48.9 NC_002665.1 + 77617 0.67 0.987854
Target:  5'- aAGAGGggCCAGGGggaAAGGGCcaUGggUa -3'
miRNA:   3'- -UCUUCuaGGUCCUg--UUCCUG--ACuuAg -5'
10201 3' -48.9 NC_002665.1 + 16492 0.67 0.987854
Target:  5'- uGAGGcAUCUGGGucACAAGGuACUGggUa -3'
miRNA:   3'- uCUUC-UAGGUCC--UGUUCC-UGACuuAg -5'
10201 3' -48.9 NC_002665.1 + 71880 0.67 0.984278
Target:  5'- aGGGAGAUaCAGGAgaCGGGGACU--AUCg -3'
miRNA:   3'- -UCUUCUAgGUCCU--GUUCCUGAcuUAG- -5'
10201 3' -48.9 NC_002665.1 + 15601 0.68 0.974802
Target:  5'- cAGGAGAggccgguagagCCAGGAUAGGGAgcuaCUGuGUCc -3'
miRNA:   3'- -UCUUCUa----------GGUCCUGUUCCU----GACuUAG- -5'
10201 3' -48.9 NC_002665.1 + 24336 0.71 0.922985
Target:  5'- uGGAGGAUaugagggGGGAgGAGGGCUGGAUa -3'
miRNA:   3'- -UCUUCUAgg-----UCCUgUUCCUGACUUAg -5'
10201 3' -48.9 NC_002665.1 + 70567 0.74 0.804312
Target:  5'- --cGGGUCCaAGGAUAuggagaacauccAGGACUGAAUCc -3'
miRNA:   3'- ucuUCUAGG-UCCUGU------------UCCUGACUUAG- -5'
10201 3' -48.9 NC_002665.1 + 15779 1.12 0.006157
Target:  5'- cAGAAGAUCCAGGACAAGGACUGAAUCa -3'
miRNA:   3'- -UCUUCUAGGUCCUGUUCCUGACUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.