miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10202 3' -50.4 NC_002665.1 + 21403 1.09 0.005616
Target:  5'- aCCUGAUUGGCUAACUGCCUUGACCAAu -3'
miRNA:   3'- -GGACUAACCGAUUGACGGAACUGGUU- -5'
10202 3' -50.4 NC_002665.1 + 21232 0.79 0.429415
Target:  5'- uCCaUGAUUGGCUGACUGCCaugagGACgGAc -3'
miRNA:   3'- -GG-ACUAACCGAUUGACGGaa---CUGgUU- -5'
10202 3' -50.4 NC_002665.1 + 97477 0.71 0.845639
Target:  5'- cCCUGAUUGGUgGAUUGCUgaaaGCCAAu -3'
miRNA:   3'- -GGACUAACCGaUUGACGGaac-UGGUU- -5'
10202 3' -50.4 NC_002665.1 + 12015 0.69 0.913643
Target:  5'- cCCU-AUUGGUaacAGCUGCCUggGACCAc -3'
miRNA:   3'- -GGAcUAACCGa--UUGACGGAa-CUGGUu -5'
10202 3' -50.4 NC_002665.1 + 105964 0.68 0.941466
Target:  5'- uCCUGucuagaaccauauGUUGGCUGauaaACUGUUUUGGCCu- -3'
miRNA:   3'- -GGAC-------------UAACCGAU----UGACGGAACUGGuu -5'
10202 3' -50.4 NC_002665.1 + 24770 0.67 0.963434
Target:  5'- aUCUGAUaucCUGACUGCCaaGGCCAu -3'
miRNA:   3'- -GGACUAaccGAUUGACGGaaCUGGUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.