miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10203 5' -48.1 NC_002665.1 + 9977 0.66 0.997552
Target:  5'- -cCACCCcGUGGccccaGAGCcAGUUcAAGGa -3'
miRNA:   3'- gaGUGGGuCACC-----UUCGaUCAAaUUCC- -5'
10203 5' -48.1 NC_002665.1 + 44316 0.66 0.997552
Target:  5'- uUUACCUGGUGGAuuuGCUA-UUaAAGGg -3'
miRNA:   3'- gAGUGGGUCACCUu--CGAUcAAaUUCC- -5'
10203 5' -48.1 NC_002665.1 + 23784 0.67 0.995159
Target:  5'- -gCGCuCUGGUGGggGUUGGg--GGGGc -3'
miRNA:   3'- gaGUG-GGUCACCuuCGAUCaaaUUCC- -5'
10203 5' -48.1 NC_002665.1 + 96215 0.67 0.992329
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccGGGGa -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa----UUCC- -5'
10203 5' -48.1 NC_002665.1 + 96259 0.67 0.992329
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccGGGGa -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa----UUCC- -5'
10203 5' -48.1 NC_002665.1 + 96809 0.67 0.992329
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccGGGGa -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa----UUCC- -5'
10203 5' -48.1 NC_002665.1 + 96325 0.68 0.990622
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccggggAAGGg -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa--------UUCC- -5'
10203 5' -48.1 NC_002665.1 + 96403 0.68 0.990622
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccggggAAGGg -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa--------UUCC- -5'
10203 5' -48.1 NC_002665.1 + 96454 0.68 0.990622
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccggggAAGGg -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa--------UUCC- -5'
10203 5' -48.1 NC_002665.1 + 96527 0.68 0.990622
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccggggAAGGg -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa--------UUCC- -5'
10203 5' -48.1 NC_002665.1 + 96853 0.68 0.990622
Target:  5'- --aACCCGGggaaGGAGGCUAGggaacccggggAAGGg -3'
miRNA:   3'- gagUGGGUCa---CCUUCGAUCaaa--------UUCC- -5'
10203 5' -48.1 NC_002665.1 + 98368 0.68 0.988004
Target:  5'- cCUCGCCCA-UGGAuugagcggGGCgcuuuucccuggGGUUUAGGGu -3'
miRNA:   3'- -GAGUGGGUcACCU--------UCGa-----------UCAAAUUCC- -5'
10203 5' -48.1 NC_002665.1 + 23885 1.12 0.007974
Target:  5'- aCUCACCCAGUGGAAGCUAGUUUAAGGc -3'
miRNA:   3'- -GAGUGGGUCACCUUCGAUCAAAUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.