miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10206 3' -50.9 NC_002665.1 + 56184 0.67 0.958226
Target:  5'- ----gGAGAACACCCCUg--GAuGUCu -3'
miRNA:   3'- uccuaCUCUUGUGGGGAagaCUuCAG- -5'
10206 3' -50.9 NC_002665.1 + 90179 0.67 0.958226
Target:  5'- -aGAUGAcAACACCCCUUCaguuaagaUGAAuGUCc -3'
miRNA:   3'- ucCUACUcUUGUGGGGAAG--------ACUU-CAG- -5'
10206 3' -50.9 NC_002665.1 + 59464 1.1 0.005187
Target:  5'- gAGGAUGAGAACACCCCUUCUGAAGUCc -3'
miRNA:   3'- -UCCUACUCUUGUGGGGAAGACUUCAG- -5'
10206 3' -50.9 NC_002665.1 + 10719 0.73 0.738715
Target:  5'- ---cUGAGAAUAUCUgUUCUGAGGUCg -3'
miRNA:   3'- uccuACUCUUGUGGGgAAGACUUCAG- -5'
10206 3' -50.9 NC_002665.1 + 14619 0.71 0.808383
Target:  5'- gGGGAUGucuGGGCACCUa-UCUGggGUg -3'
miRNA:   3'- -UCCUACu--CUUGUGGGgaAGACuuCAg -5'
10206 3' -50.9 NC_002665.1 + 6017 0.68 0.935256
Target:  5'- --aGUGAGAGCACUCCUcugacCUGAAGcUCu -3'
miRNA:   3'- uccUACUCUUGUGGGGAa----GACUUC-AG- -5'
10206 3' -50.9 NC_002665.1 + 13794 0.66 0.974872
Target:  5'- gAGGAUGAucgucACGCCCCcaaUGggGUUu -3'
miRNA:   3'- -UCCUACUcu---UGUGGGGaagACuuCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.