miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10207 3' -56.3 NC_002665.1 + 108559 0.68 0.692901
Target:  5'- uGCCCAGGGcGUacugguacugugugGGGUGGGGGACGagGGc -3'
miRNA:   3'- -UGGGUCCU-CA--------------CCCGUCCUCUGUaaCU- -5'
10207 3' -56.3 NC_002665.1 + 68351 0.67 0.746927
Target:  5'- gGCCCAu---UGGGCguugGGGGGGCAUUGAc -3'
miRNA:   3'- -UGGGUccucACCCG----UCCUCUGUAACU- -5'
10207 3' -56.3 NC_002665.1 + 96347 0.66 0.795175
Target:  5'- aACCCGGGGaagGGGaAGGAGGCuaggGAa -3'
miRNA:   3'- -UGGGUCCUca-CCCgUCCUCUGuaa-CU- -5'
10207 3' -56.3 NC_002665.1 + 96375 0.66 0.795175
Target:  5'- aACCCGGGGaagGGGaAGGAGGCuaggGAa -3'
miRNA:   3'- -UGGGUCCUca-CCCgUCCUCUGuaa-CU- -5'
10207 3' -56.3 NC_002665.1 + 96782 0.66 0.795175
Target:  5'- cCCCGGGGaaGGGgaaGGGAGGCGggGAa -3'
miRNA:   3'- uGGGUCCUcaCCCg--UCCUCUGUaaCU- -5'
10207 3' -56.3 NC_002665.1 + 99970 0.66 0.83103
Target:  5'- cCCCacgucuaugAGGGcGUGGGCcccgacuuGGGGGCGUUGGu -3'
miRNA:   3'- uGGG---------UCCU-CACCCGu-------CCUCUGUAACU- -5'
10207 3' -56.3 NC_002665.1 + 68524 1.08 0.001788
Target:  5'- gACCCAGGAGUGGGCAGGAGACAUUGAu -3'
miRNA:   3'- -UGGGUCCUCACCCGUCCUCUGUAACU- -5'
10207 3' -56.3 NC_002665.1 + 38045 0.69 0.664705
Target:  5'- -gCCAGGAGUGGGU-GGAG-UGUUGc -3'
miRNA:   3'- ugGGUCCUCACCCGuCCUCuGUAACu -5'
10207 3' -56.3 NC_002665.1 + 98678 0.66 0.804396
Target:  5'- uACCCcguGGAGUGGGUuguGGGGGugugugGCAcgUGAc -3'
miRNA:   3'- -UGGGu--CCUCACCCG---UCCUC------UGUa-ACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.