miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10207 5' -56 NC_002665.1 + 77610 0.66 0.842446
Target:  5'- -uUCAcggGUGUCCCCCCGugGCaCUGGg- -3'
miRNA:   3'- ccAGU---UACGGGGGGGUugCG-GGUUac -5'
10207 5' -56 NC_002665.1 + 83555 0.66 0.842446
Target:  5'- aGGUCAAUauugGCCCCCCUAagGgGUUCAu-- -3'
miRNA:   3'- -CCAGUUA----CGGGGGGGU--UgCGGGUuac -5'
10207 5' -56 NC_002665.1 + 40859 0.66 0.842446
Target:  5'- aGGUCAGUuCCCCCCC----UCCAGUa -3'
miRNA:   3'- -CCAGUUAcGGGGGGGuugcGGGUUAc -5'
10207 5' -56 NC_002665.1 + 59944 0.66 0.840784
Target:  5'- aGGcCGGUGgCCuguCCCCCAugauauggaucuUGCCCAAUGa -3'
miRNA:   3'- -CCaGUUAC-GG---GGGGGUu-----------GCGGGUUAC- -5'
10207 5' -56 NC_002665.1 + 47642 0.69 0.700494
Target:  5'- uGGUCAGUGCCUCCgCu-CGCuCUAGUu -3'
miRNA:   3'- -CCAGUUACGGGGGgGuuGCG-GGUUAc -5'
10207 5' -56 NC_002665.1 + 107738 0.69 0.657943
Target:  5'- cGGUCAAggccauuauuuccUGCUUCCCCAAUGUCUucAUGg -3'
miRNA:   3'- -CCAGUU-------------ACGGGGGGGUUGCGGGu-UAC- -5'
10207 5' -56 NC_002665.1 + 23900 0.7 0.627588
Target:  5'- --cCAGaGCgCCCCCCAACucaCCCAGUGg -3'
miRNA:   3'- ccaGUUaCG-GGGGGGUUGc--GGGUUAC- -5'
10207 5' -56 NC_002665.1 + 27446 0.71 0.544582
Target:  5'- --cCAGUGCCCCCCUAcugaGCCUAAa- -3'
miRNA:   3'- ccaGUUACGGGGGGGUug--CGGGUUac -5'
10207 5' -56 NC_002665.1 + 23926 0.71 0.544582
Target:  5'- uGUCuccccaGCCCCCCCAACcCCCAc-- -3'
miRNA:   3'- cCAGuua---CGGGGGGGUUGcGGGUuac -5'
10207 5' -56 NC_002665.1 + 64646 0.73 0.437315
Target:  5'- uGGggaAAUGCCCCCCCGGgggaauUGUCCAGUa -3'
miRNA:   3'- -CCag-UUACGGGGGGGUU------GCGGGUUAc -5'
10207 5' -56 NC_002665.1 + 68489 1.11 0.001413
Target:  5'- uGGUCAAUGCCCCCCCAACGCCCAAUGg -3'
miRNA:   3'- -CCAGUUACGGGGGGGUUGCGGGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.