miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10210 5' -53 NC_002665.1 + 108677 0.66 0.929704
Target:  5'- cGCCCUGGGCAuguuggcacaguCCCuggcccaCAGUGcagCUCAAAg -3'
miRNA:   3'- -UGGGACCCGU------------GGG-------GUUAUa--GAGUUUg -5'
10210 5' -53 NC_002665.1 + 108236 0.67 0.906267
Target:  5'- -gCCUGGcucuguuccuaGcCACCCCAAguaucacAUCUCAGACa -3'
miRNA:   3'- ugGGACC-----------C-GUGGGGUUa------UAGAGUUUG- -5'
10210 5' -53 NC_002665.1 + 101964 0.72 0.646164
Target:  5'- cACCCUuaGCACCCgCAAgagccAUCUCAAGCa -3'
miRNA:   3'- -UGGGAccCGUGGG-GUUa----UAGAGUUUG- -5'
10210 5' -53 NC_002665.1 + 97116 1.09 0.003449
Target:  5'- cACCCUGGGCACCCCAAUAUCUCAAACc -3'
miRNA:   3'- -UGGGACCCGUGGGGUUAUAGAGUUUG- -5'
10210 5' -53 NC_002665.1 + 86705 0.7 0.781901
Target:  5'- uCCCUcaGGCACCCauCAuaAUCUCAAGCa -3'
miRNA:   3'- uGGGAc-CCGUGGG--GUuaUAGAGUUUG- -5'
10210 5' -53 NC_002665.1 + 67599 0.67 0.906267
Target:  5'- cACCCcGGGCAUaaCCAAaAUCUgGGACu -3'
miRNA:   3'- -UGGGaCCCGUGg-GGUUaUAGAgUUUG- -5'
10210 5' -53 NC_002665.1 + 56180 0.71 0.699863
Target:  5'- -gCCUGGagaaCACCCCugGAUGUCUUAGACu -3'
miRNA:   3'- ugGGACCc---GUGGGG--UUAUAGAGUUUG- -5'
10210 5' -53 NC_002665.1 + 38613 0.75 0.497546
Target:  5'- uCCCUGGGcCGCCCCAAUcauacgCUCAc-- -3'
miRNA:   3'- uGGGACCC-GUGGGGUUAua----GAGUuug -5'
10210 5' -53 NC_002665.1 + 12944 0.67 0.899609
Target:  5'- gGCCCUuGGCGCCUUGgaaggucuuuGUAUCUaCAGACc -3'
miRNA:   3'- -UGGGAcCCGUGGGGU----------UAUAGA-GUUUG- -5'
10210 5' -53 NC_002665.1 + 7620 0.69 0.828653
Target:  5'- -aCCUGGGCACCCuCAucuuccuuuUCUCuaAAACu -3'
miRNA:   3'- ugGGACCCGUGGG-GUuau------AGAG--UUUG- -5'
10210 5' -53 NC_002665.1 + 7208 0.67 0.899609
Target:  5'- cAUCCUGGGUugCCUcugagaGAUAgCUUAGGCc -3'
miRNA:   3'- -UGGGACCCGugGGG------UUAUaGAGUUUG- -5'
10210 5' -53 NC_002665.1 + 3430 0.67 0.877343
Target:  5'- uACCCgGGGCACCUCuaccauuaauccuGGUGUUUCuGAUg -3'
miRNA:   3'- -UGGGaCCCGUGGGG-------------UUAUAGAGuUUG- -5'
10210 5' -53 NC_002665.1 + 961 0.68 0.870431
Target:  5'- gUCCaUGGGCucccuuGCCCCAAUGUC-CAAc- -3'
miRNA:   3'- uGGG-ACCCG------UGGGGUUAUAGaGUUug -5'
10210 5' -53 NC_002665.1 + 368 0.71 0.720971
Target:  5'- gGCCUgauGGCGCCUCAGUGUUUCAc-- -3'
miRNA:   3'- -UGGGac-CCGUGGGGUUAUAGAGUuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.