miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10211 3' -45.4 NC_002665.1 + 90028 0.66 0.999927
Target:  5'- uGUAGcuuuggcugUGGuGGGGAugucuucuuGGUUGGGGAGUg -3'
miRNA:   3'- uCAUCa--------ACCuCUCCU---------UUAAUUCCUCA- -5'
10211 3' -45.4 NC_002665.1 + 83708 0.66 0.999902
Target:  5'- uGUGGUUGuGGGGGGuccuucuUUGGGGcAGUg -3'
miRNA:   3'- uCAUCAAC-CUCUCCuuu----AAUUCC-UCA- -5'
10211 3' -45.4 NC_002665.1 + 21132 0.67 0.999713
Target:  5'- -uUGGggGGuuGGGAGGUUGAGGGa- -3'
miRNA:   3'- ucAUCaaCCucUCCUUUAAUUCCUca -5'
10211 3' -45.4 NC_002665.1 + 90081 0.71 0.985852
Target:  5'- gAGUuGUUGGAGGGGuAGUgggggcAGGGGUg -3'
miRNA:   3'- -UCAuCAACCUCUCCuUUAau----UCCUCA- -5'
10211 3' -45.4 NC_002665.1 + 89271 0.74 0.942006
Target:  5'- gGGUAuGUUGGGGGGGA---UGGGGGGc -3'
miRNA:   3'- -UCAU-CAACCUCUCCUuuaAUUCCUCa -5'
10211 3' -45.4 NC_002665.1 + 97264 1.1 0.019307
Target:  5'- cAGUAGUUGGAGAGGAAAUUAAGGAGUg -3'
miRNA:   3'- -UCAUCAACCUCUCCUUUAAUUCCUCA- -5'
10211 3' -45.4 NC_002665.1 + 97084 0.66 0.99987
Target:  5'- uGGU-GUUGGGGGGGuaAAGUUGAG-AGUc -3'
miRNA:   3'- -UCAuCAACCUCUCC--UUUAAUUCcUCA- -5'
10211 3' -45.4 NC_002665.1 + 63668 0.67 0.999691
Target:  5'- ---uGUUGGAGAuGGAAGaacaauuuggaucuUUGGGGGGUc -3'
miRNA:   3'- ucauCAACCUCU-CCUUU--------------AAUUCCUCA- -5'
10211 3' -45.4 NC_002665.1 + 23829 0.7 0.994951
Target:  5'- --gGGUUGGGGucuuGGggGUUugGGGGAGa -3'
miRNA:   3'- ucaUCAACCUCu---CCuuUAA--UUCCUCa -5'
10211 3' -45.4 NC_002665.1 + 23770 0.74 0.936748
Target:  5'- gGGUgAGUUGGGGGgcgcucugguGGggGUUGGGGGGg -3'
miRNA:   3'- -UCA-UCAACCUCU----------CCuuUAAUUCCUCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.