miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10211 5' -51.2 NC_002665.1 + 97221 1.11 0.004357
Target:  5'- gGGACUCUCAACUUUACCCCCCCAACAc -3'
miRNA:   3'- -CCUGAGAGUUGAAAUGGGGGGGUUGU- -5'
10211 5' -51.2 NC_002665.1 + 89129 0.75 0.615385
Target:  5'- aGGACUC-CAAgccccccauCCCCCCCAACAu -3'
miRNA:   3'- -CCUGAGaGUUgaaau----GGGGGGGUUGU- -5'
10211 5' -51.2 NC_002665.1 + 81299 0.72 0.767315
Target:  5'- -uGCUUUCuuuUUUUAUCCCCCCAACu -3'
miRNA:   3'- ccUGAGAGuu-GAAAUGGGGGGGUUGu -5'
10211 5' -51.2 NC_002665.1 + 42480 0.71 0.815208
Target:  5'- gGGGCUCuUCAAC---ACCCCCCUguguuuaaGACAu -3'
miRNA:   3'- -CCUGAG-AGUUGaaaUGGGGGGG--------UUGU- -5'
10211 5' -51.2 NC_002665.1 + 79367 0.67 0.956165
Target:  5'- uGGAuCUUUUGACagUACCUCCCCcuuAACAa -3'
miRNA:   3'- -CCU-GAGAGUUGaaAUGGGGGGG---UUGU- -5'
10211 5' -51.2 NC_002665.1 + 29713 0.67 0.963716
Target:  5'- aGACUCccCAGau---CCCCCCUAACAu -3'
miRNA:   3'- cCUGAGa-GUUgaaauGGGGGGGUUGU- -5'
10211 5' -51.2 NC_002665.1 + 89935 0.66 0.98084
Target:  5'- aGAUaCUCAccccugcccccACU--ACCCCUCCAACAa -3'
miRNA:   3'- cCUGaGAGU-----------UGAaaUGGGGGGGUUGU- -5'
10211 5' -51.2 NC_002665.1 + 79494 0.66 0.97326
Target:  5'- aGGuACUgUCAAaag-AUCCaCCCCAACAa -3'
miRNA:   3'- -CC-UGAgAGUUgaaaUGGG-GGGGUUGU- -5'
10211 5' -51.2 NC_002665.1 + 3351 0.66 0.97326
Target:  5'- aGGGCaaUUGAU---GCUCCCCCAGCAu -3'
miRNA:   3'- -CCUGagAGUUGaaaUGGGGGGGUUGU- -5'
10211 5' -51.2 NC_002665.1 + 68495 0.66 0.97326
Target:  5'- -aACUauuggUCAAU---GCCCCCCCAACGc -3'
miRNA:   3'- ccUGAg----AGUUGaaaUGGGGGGGUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.