miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10212 3' -48.7 NC_002665.1 + 98287 0.68 0.974206
Target:  5'- cGACCCUUUcacUUUUGCCCuccaguggcACAGGg- -3'
miRNA:   3'- -CUGGGAAAuucAAAACGGG---------UGUCCac -5'
10212 3' -48.7 NC_002665.1 + 98110 0.72 0.872003
Target:  5'- aACCUaccu-GUUaccUUGCCCACAGGUGa -3'
miRNA:   3'- cUGGGaaauuCAA---AACGGGUGUCCAC- -5'
10212 3' -48.7 NC_002665.1 + 98104 1.11 0.007058
Target:  5'- cGACCCUUUAAGUUUUGCCCACAGGUGg -3'
miRNA:   3'- -CUGGGAAAUUCAAAACGGGUGUCCAC- -5'
10212 3' -48.7 NC_002665.1 + 97924 0.69 0.956848
Target:  5'- uGGCuCCUaccuGUUaccUUGUCCACAGGUGa -3'
miRNA:   3'- -CUG-GGAaauuCAA---AACGGGUGUCCAC- -5'
10212 3' -48.7 NC_002665.1 + 79826 0.71 0.915074
Target:  5'- -gUCCUUUGAGaaUUUUGCCCAUuGGUa -3'
miRNA:   3'- cuGGGAAAUUC--AAAACGGGUGuCCAc -5'
10212 3' -48.7 NC_002665.1 + 52636 0.7 0.952601
Target:  5'- aGGCCCcacaGAGUUUgggGCCCAUuuuGGUGc -3'
miRNA:   3'- -CUGGGaaa-UUCAAAa--CGGGUGu--CCAC- -5'
10212 3' -48.7 NC_002665.1 + 8061 0.66 0.99294
Target:  5'- cAUCCUUUAAagUUUGUCCACAGuGUc -3'
miRNA:   3'- cUGGGAAAUUcaAAACGGGUGUC-CAc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.