Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10215 | 3' | -55.5 | NC_002665.1 | + | 80401 | 0.66 | 0.851848 |
Target: 5'- aCAGcuCCCCCC-CACCCCAa------ -3' miRNA: 3'- cGUCu-GGGGGGaGUGGGGUacuuaua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 23900 | 0.66 | 0.82646 |
Target: 5'- cCAGagcGCCCCCCaacUCACCCaGUGGAa-- -3' miRNA: 3'- cGUC---UGGGGGG---AGUGGGgUACUUaua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 73621 | 0.67 | 0.817607 |
Target: 5'- ---cACCCCCCUCcaggGCCaugaCAUGggUAUa -3' miRNA: 3'- cgucUGGGGGGAG----UGGg---GUACuuAUA- -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 62021 | 0.67 | 0.808573 |
Target: 5'- cCAGACCCCCuaagcuCUCAUCCCAc------ -3' miRNA: 3'- cGUCUGGGGG------GAGUGGGGUacuuaua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 66954 | 0.67 | 0.799368 |
Target: 5'- aCAGACCCCCaacCACuCCCAggGGAUc- -3' miRNA: 3'- cGUCUGGGGGga-GUG-GGGUa-CUUAua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 108207 | 0.67 | 0.79 |
Target: 5'- -uGGGCCaCCCUUCagcguGCUCCGUGGAUGc -3' miRNA: 3'- cgUCUGG-GGGGAG-----UGGGGUACUUAUa -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 25919 | 0.68 | 0.741071 |
Target: 5'- cGCGuGGCCCCCCccgUACCCCAc------ -3' miRNA: 3'- -CGU-CUGGGGGGa--GUGGGGUacuuaua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 102325 | 0.69 | 0.710407 |
Target: 5'- ----uUCUCCCUC-CCCCAUGggUAUa -3' miRNA: 3'- cgucuGGGGGGAGuGGGGUACuuAUA- -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 61356 | 0.69 | 0.700029 |
Target: 5'- gGUAGACCCCCUUCuuCCUcUGGAc-- -3' miRNA: 3'- -CGUCUGGGGGGAGugGGGuACUUaua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 100248 | 0.7 | 0.636821 |
Target: 5'- aCAGACCCCCgacagaaUCGCCCCAUc----- -3' miRNA: 3'- cGUCUGGGGGg------AGUGGGGUAcuuaua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 61724 | 0.71 | 0.573446 |
Target: 5'- uGC-GACCCCCCUUGuCUCCAguUGGAUAUc -3' miRNA: 3'- -CGuCUGGGGGGAGU-GGGGU--ACUUAUA- -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 86456 | 0.72 | 0.521774 |
Target: 5'- -aAGACaCCCCCUUACCCCAa------ -3' miRNA: 3'- cgUCUG-GGGGGAGUGGGGUacuuaua -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 18524 | 0.78 | 0.224263 |
Target: 5'- uCAGAaaacaCCCCCUC-CCCCAUGGAUAc -3' miRNA: 3'- cGUCUg----GGGGGAGuGGGGUACUUAUa -5' |
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10215 | 3' | -55.5 | NC_002665.1 | + | 105001 | 1.08 | 0.002246 |
Target: 5'- gGCAGACCCCCCUCACCCCAUGAAUAUg -3' miRNA: 3'- -CGUCUGGGGGGAGUGGGGUACUUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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