miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10215 3' -55.5 NC_002665.1 + 80401 0.66 0.851848
Target:  5'- aCAGcuCCCCCC-CACCCCAa------ -3'
miRNA:   3'- cGUCu-GGGGGGaGUGGGGUacuuaua -5'
10215 3' -55.5 NC_002665.1 + 23900 0.66 0.82646
Target:  5'- cCAGagcGCCCCCCaacUCACCCaGUGGAa-- -3'
miRNA:   3'- cGUC---UGGGGGG---AGUGGGgUACUUaua -5'
10215 3' -55.5 NC_002665.1 + 73621 0.67 0.817607
Target:  5'- ---cACCCCCCUCcaggGCCaugaCAUGggUAUa -3'
miRNA:   3'- cgucUGGGGGGAG----UGGg---GUACuuAUA- -5'
10215 3' -55.5 NC_002665.1 + 62021 0.67 0.808573
Target:  5'- cCAGACCCCCuaagcuCUCAUCCCAc------ -3'
miRNA:   3'- cGUCUGGGGG------GAGUGGGGUacuuaua -5'
10215 3' -55.5 NC_002665.1 + 66954 0.67 0.799368
Target:  5'- aCAGACCCCCaacCACuCCCAggGGAUc- -3'
miRNA:   3'- cGUCUGGGGGga-GUG-GGGUa-CUUAua -5'
10215 3' -55.5 NC_002665.1 + 108207 0.67 0.79
Target:  5'- -uGGGCCaCCCUUCagcguGCUCCGUGGAUGc -3'
miRNA:   3'- cgUCUGG-GGGGAG-----UGGGGUACUUAUa -5'
10215 3' -55.5 NC_002665.1 + 25919 0.68 0.741071
Target:  5'- cGCGuGGCCCCCCccgUACCCCAc------ -3'
miRNA:   3'- -CGU-CUGGGGGGa--GUGGGGUacuuaua -5'
10215 3' -55.5 NC_002665.1 + 102325 0.69 0.710407
Target:  5'- ----uUCUCCCUC-CCCCAUGggUAUa -3'
miRNA:   3'- cgucuGGGGGGAGuGGGGUACuuAUA- -5'
10215 3' -55.5 NC_002665.1 + 61356 0.69 0.700029
Target:  5'- gGUAGACCCCCUUCuuCCUcUGGAc-- -3'
miRNA:   3'- -CGUCUGGGGGGAGugGGGuACUUaua -5'
10215 3' -55.5 NC_002665.1 + 100248 0.7 0.636821
Target:  5'- aCAGACCCCCgacagaaUCGCCCCAUc----- -3'
miRNA:   3'- cGUCUGGGGGg------AGUGGGGUAcuuaua -5'
10215 3' -55.5 NC_002665.1 + 61724 0.71 0.573446
Target:  5'- uGC-GACCCCCCUUGuCUCCAguUGGAUAUc -3'
miRNA:   3'- -CGuCUGGGGGGAGU-GGGGU--ACUUAUA- -5'
10215 3' -55.5 NC_002665.1 + 86456 0.72 0.521774
Target:  5'- -aAGACaCCCCCUUACCCCAa------ -3'
miRNA:   3'- cgUCUG-GGGGGAGUGGGGUacuuaua -5'
10215 3' -55.5 NC_002665.1 + 18524 0.78 0.224263
Target:  5'- uCAGAaaacaCCCCCUC-CCCCAUGGAUAc -3'
miRNA:   3'- cGUCUg----GGGGGAGuGGGGUACUUAUa -5'
10215 3' -55.5 NC_002665.1 + 105001 1.08 0.002246
Target:  5'- gGCAGACCCCCCUCACCCCAUGAAUAUg -3'
miRNA:   3'- -CGUCUGGGGGGAGUGGGGUACUUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.