miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10215 5' -52.6 NC_002665.1 + 86462 0.67 0.916439
Target:  5'- uAGAUGugGGUGGGu----UGuuCCCAUu -3'
miRNA:   3'- -UCUACugCCACCCuuaguACu-GGGUG- -5'
10215 5' -52.6 NC_002665.1 + 70050 0.71 0.739306
Target:  5'- uGGUGACaguggcccaaaaGGUGGGAuuuUUAUGACCCcugGCa -3'
miRNA:   3'- uCUACUG------------CCACCCUu--AGUACUGGG---UG- -5'
10215 5' -52.6 NC_002665.1 + 104818 0.73 0.633579
Target:  5'- aAGGUccCGGUGGuGggUCAUGAuuCCCACc -3'
miRNA:   3'- -UCUAcuGCCACC-CuuAGUACU--GGGUG- -5'
10215 5' -52.6 NC_002665.1 + 104964 1.09 0.004019
Target:  5'- cAGAUGACGGUGGGAAUCAUGACCCACc -3'
miRNA:   3'- -UCUACUGCCACCCUUAGUACUGGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.