miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10216 3' -54 NC_002665.1 + 105235 1.09 0.002941
Target:  5'- cCACCUAACCCACCAGUCGAAAGGCCAa -3'
miRNA:   3'- -GUGGAUUGGGUGGUCAGCUUUCCGGU- -5'
10216 3' -54 NC_002665.1 + 105139 0.8 0.249706
Target:  5'- cCACCgagucuaCCACCcGUCGAAAGGCCAa -3'
miRNA:   3'- -GUGGauug---GGUGGuCAGCUUUCCGGU- -5'
10216 3' -54 NC_002665.1 + 178 0.74 0.506214
Target:  5'- aUACC--ACCCACCacAGUCaAGAGGCCAg -3'
miRNA:   3'- -GUGGauUGGGUGG--UCAGcUUUCCGGU- -5'
10216 3' -54 NC_002665.1 + 97151 0.7 0.69549
Target:  5'- gACCUAAUCUGCCAGUUGGAacccaGGGUg- -3'
miRNA:   3'- gUGGAUUGGGUGGUCAGCUU-----UCCGgu -5'
10216 3' -54 NC_002665.1 + 87833 0.69 0.795848
Target:  5'- gGCCUAuACCCACCAGaCGccGAGGUa- -3'
miRNA:   3'- gUGGAU-UGGGUGGUCaGCu-UUCCGgu -5'
10216 3' -54 NC_002665.1 + 70059 0.68 0.805169
Target:  5'- gGCCUGGCCaCACCAGUacugugguUGAuuaguGGGGCUg -3'
miRNA:   3'- gUGGAUUGG-GUGGUCA--------GCU-----UUCCGGu -5'
10216 3' -54 NC_002665.1 + 102791 0.68 0.832074
Target:  5'- gGCC-AACCCcuGCCuGUUGAGccaccAGGCCAu -3'
miRNA:   3'- gUGGaUUGGG--UGGuCAGCUU-----UCCGGU- -5'
10216 3' -54 NC_002665.1 + 28606 0.67 0.872867
Target:  5'- gGCUUGGCUgGCCAGUCGggGGa--- -3'
miRNA:   3'- gUGGAUUGGgUGGUCAGCuuUCcggu -5'
10216 3' -54 NC_002665.1 + 108339 0.66 0.893212
Target:  5'- gCGCCUuaugcACCCugCucuggaauccaUCGGAGGGCCAu -3'
miRNA:   3'- -GUGGAu----UGGGugGuc---------AGCUUUCCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.