miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10217 3' -54.7 NC_002665.1 + 108439 1.09 0.002246
Target:  5'- cUGACAUCUCCCUCGUGGUACUGCCACu -3'
miRNA:   3'- -ACUGUAGAGGGAGCACCAUGACGGUG- -5'
10217 3' -54.7 NC_002665.1 + 12025 0.68 0.803855
Target:  5'- cUGAUAUCaUCCCUauUGGUaacaGCUGCCu- -3'
miRNA:   3'- -ACUGUAG-AGGGAgcACCA----UGACGGug -5'
10217 3' -54.7 NC_002665.1 + 13143 0.67 0.821964
Target:  5'- -uGCAUCUCCCa--UGGcuuucACUGCCACa -3'
miRNA:   3'- acUGUAGAGGGagcACCa----UGACGGUG- -5'
10217 3' -54.7 NC_002665.1 + 52215 0.68 0.794545
Target:  5'- gUGACAgcaCCCaaacauuuaaUUGUGGUuCUGCCACa -3'
miRNA:   3'- -ACUGUagaGGG----------AGCACCAuGACGGUG- -5'
10217 3' -54.7 NC_002665.1 + 8015 0.67 0.847712
Target:  5'- gUGACuUCUUUgaUGUGGaUGCUGCCAUc -3'
miRNA:   3'- -ACUGuAGAGGgaGCACC-AUGACGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.