miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10217 5' -50 NC_002665.1 + 108400 1.1 0.006455
Target:  5'- gCGAUGGCAGUCAUGUCUGAGAUGUGAu -3'
miRNA:   3'- -GCUACCGUCAGUACAGACUCUACACU- -5'
10217 5' -50 NC_002665.1 + 1398 0.66 0.99153
Target:  5'- -uAUGGUuugugGGcCAUG-CUGGGGUGUGAa -3'
miRNA:   3'- gcUACCG-----UCaGUACaGACUCUACACU- -5'
10217 5' -50 NC_002665.1 + 33085 0.69 0.943741
Target:  5'- gGAUGGCAcauUCGUGUUUGcuuuuGGUGUGGc -3'
miRNA:   3'- gCUACCGUc--AGUACAGACu----CUACACU- -5'
10217 5' -50 NC_002665.1 + 100861 0.67 0.979236
Target:  5'- uGGUGGCAag-AUGUCUcccaucugGGGAUGUGAu -3'
miRNA:   3'- gCUACCGUcagUACAGA--------CUCUACACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.