miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10218 3' -63.4 NC_002665.1 + 140 1.08 0.000397
Target:  5'- aACAGCCCUCCACGGCCCUUCCCCCACa -3'
miRNA:   3'- -UGUCGGGAGGUGCCGGGAAGGGGGUG- -5'
10218 3' -63.4 NC_002665.1 + 64605 0.75 0.128498
Target:  5'- gUAGCCCaggaaacaACGGgCCUUCCCCCACa -3'
miRNA:   3'- uGUCGGGagg-----UGCCgGGAAGGGGGUG- -5'
10218 3' -63.4 NC_002665.1 + 77461 0.73 0.182614
Target:  5'- cCAGaCCCUgaacuccaauacCCAUGGCCCUUUCCCCc- -3'
miRNA:   3'- uGUC-GGGA------------GGUGCCGGGAAGGGGGug -5'
10218 3' -63.4 NC_002665.1 + 108748 0.72 0.190415
Target:  5'- aGCAGCCCUCUgacccugggggAUGccauggauuccacaGCCCUcgUCCCCCACc -3'
miRNA:   3'- -UGUCGGGAGG-----------UGC--------------CGGGA--AGGGGGUG- -5'
10218 3' -63.4 NC_002665.1 + 32522 0.71 0.216635
Target:  5'- uGCAGCaa-CCAUGGCCCUUaccgCCCCAUa -3'
miRNA:   3'- -UGUCGggaGGUGCCGGGAAg---GGGGUG- -5'
10218 3' -63.4 NC_002665.1 + 100186 0.7 0.249984
Target:  5'- cGCGGCag--CACGGUCC-UCCCCCGCa -3'
miRNA:   3'- -UGUCGggagGUGCCGGGaAGGGGGUG- -5'
10218 3' -63.4 NC_002665.1 + 5434 0.67 0.39158
Target:  5'- gACAcucGCCCUCCcgGgGGUCCaggUCCCCCu- -3'
miRNA:   3'- -UGU---CGGGAGG--UgCCGGGa--AGGGGGug -5'
10218 3' -63.4 NC_002665.1 + 24472 0.66 0.470303
Target:  5'- cCAGCCCUCCucccCCCUcauaUCCUCCAg -3'
miRNA:   3'- uGUCGGGAGGugccGGGA----AGGGGGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.