miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10219 3' -49.7 NC_002665.1 + 108329 0.66 0.984421
Target:  5'- -cUGAAGGGuGGCcCAgagGUguucgucggGGCUAUAGg -3'
miRNA:   3'- uuAUUUCCC-CCGuGUa--CA---------CCGAUAUC- -5'
10219 3' -49.7 NC_002665.1 + 6573 0.67 0.965374
Target:  5'- --cAAGGaGGGGaauCAUGUGGCcAUGGu -3'
miRNA:   3'- uuaUUUC-CCCCgu-GUACACCGaUAUC- -5'
10219 3' -49.7 NC_002665.1 + 89956 0.68 0.957766
Target:  5'- -uUAGAGGGGaGacUugGUGUGGCUGa-- -3'
miRNA:   3'- uuAUUUCCCC-C--GugUACACCGAUauc -5'
10219 3' -49.7 NC_002665.1 + 70499 0.82 0.297827
Target:  5'- --aAGAGGGGGCGCGUGUGGgUGa-- -3'
miRNA:   3'- uuaUUUCCCCCGUGUACACCgAUauc -5'
10219 3' -49.7 NC_002665.1 + 5988 0.67 0.977599
Target:  5'- ----uAGGcaccaauaGGGC-CAUGUGGCUAUAu -3'
miRNA:   3'- uuauuUCC--------CCCGuGUACACCGAUAUc -5'
10219 3' -49.7 NC_002665.1 + 23770 0.67 0.974896
Target:  5'- gGGUGAguuGGGGGGCGCucugGUGGggGuUGGg -3'
miRNA:   3'- -UUAUU---UCCCCCGUGua--CACCgaU-AUC- -5'
10219 3' -49.7 NC_002665.1 + 24860 0.67 0.968793
Target:  5'- --cGGAGGGGGCG--UGUGGuCUGg-- -3'
miRNA:   3'- uuaUUUCCCCCGUguACACC-GAUauc -5'
10219 3' -49.7 NC_002665.1 + 108581 0.67 0.968793
Target:  5'- uGUGGGGuGGGGgACGaG-GGCUGUGGa -3'
miRNA:   3'- uUAUUUC-CCCCgUGUaCaCCGAUAUC- -5'
10219 3' -49.7 NC_002665.1 + 73503 0.68 0.961701
Target:  5'- --gGAGGGGGGUgACAUcccGUGGCaccAUAGa -3'
miRNA:   3'- uuaUUUCCCCCG-UGUA---CACCGa--UAUC- -5'
10219 3' -49.7 NC_002665.1 + 2668 1.07 0.00885
Target:  5'- cAAUAAAGGGGGCACAUGUGGCUAUAGu -3'
miRNA:   3'- -UUAUUUCCCCCGUGUACACCGAUAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.