Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1022 | 5' | -54.5 | NC_000924.1 | + | 54632 | 0.66 | 0.754638 |
Target: 5'- cGCaaggGGCCGUauuacUCCCGUACCA--GCa -3' miRNA: 3'- -CGguuaUCGGCG-----GGGGCAUGGUuaCG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 45396 | 0.66 | 0.754638 |
Target: 5'- cGCCAG-AGCCGgaaCCUUCGUAagccacauCCAGUGUa -3' miRNA: 3'- -CGGUUaUCGGC---GGGGGCAU--------GGUUACG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 50216 | 0.66 | 0.794698 |
Target: 5'- cGUgAAUAGCCGCCCugcgCCGcAUUAAUcGCc -3' miRNA: 3'- -CGgUUAUCGGCGGG----GGCaUGGUUA-CG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 39477 | 0.66 | 0.804318 |
Target: 5'- uGCCGGUccccguucgccGGuuGCCCCgacaGgGCCGGUGUc -3' miRNA: 3'- -CGGUUA-----------UCggCGGGGg---CaUGGUUACG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 24570 | 0.66 | 0.804318 |
Target: 5'- cGCCAcUGGCUGaccauCCCUGUACUuucagGCu -3' miRNA: 3'- -CGGUuAUCGGCg----GGGGCAUGGuua--CG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 32170 | 0.66 | 0.774962 |
Target: 5'- gGCCAcacuuuauuGUGGaUCGCCCCUGUA---GUGCu -3' miRNA: 3'- -CGGU---------UAUC-GGCGGGGGCAUgguUACG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 27837 | 0.66 | 0.764868 |
Target: 5'- cGCCAc---CUGCUCCgGUACC-GUGCg -3' miRNA: 3'- -CGGUuaucGGCGGGGgCAUGGuUACG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 33313 | 0.68 | 0.65833 |
Target: 5'- uCCAcAUAacGCUGCCCCUGUGUCAggGCg -3' miRNA: 3'- cGGU-UAU--CGGCGGGGGCAUGGUuaCG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 47465 | 0.71 | 0.476074 |
Target: 5'- uGCCAccaguUGGCCGCCaacacucaguuUCUGUcuuGCCGGUGCa -3' miRNA: 3'- -CGGUu----AUCGGCGG-----------GGGCA---UGGUUACG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 51563 | 0.82 | 0.111165 |
Target: 5'- aGCCGGUAGCC-CUUCaCGUACCGGUGCu -3' miRNA: 3'- -CGGUUAUCGGcGGGG-GCAUGGUUACG- -5' |
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1022 | 5' | -54.5 | NC_000924.1 | + | 47661 | 1.13 | 0.000693 |
Target: 5'- cGCCAAUAGCCGCCCCCGUACCAAUGCc -3' miRNA: 3'- -CGGUUAUCGGCGGGGGCAUGGUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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