miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10221 3' -48.1 NC_002665.1 + 14506 1.13 0.006568
Target:  5'- aUCCCCAUCCAAUUCCAAACUGACAUCa -3'
miRNA:   3'- -AGGGGUAGGUUAAGGUUUGACUGUAG- -5'
10221 3' -48.1 NC_002665.1 + 64090 0.77 0.689044
Target:  5'- uUCCCCAUCCGccUCCAcgccccCUGACAUUu -3'
miRNA:   3'- -AGGGGUAGGUuaAGGUuu----GACUGUAG- -5'
10221 3' -48.1 NC_002665.1 + 12042 0.75 0.813605
Target:  5'- uUCCCCuccagCCAGUggCCGGACUGACu-- -3'
miRNA:   3'- -AGGGGua---GGUUAa-GGUUUGACUGuag -5'
10221 3' -48.1 NC_002665.1 + 76395 0.69 0.972158
Target:  5'- uUCCCUGUCUuguacauugaggGAUUUCAgauGAUUGACAUCu -3'
miRNA:   3'- -AGGGGUAGG------------UUAAGGU---UUGACUGUAG- -5'
10221 3' -48.1 NC_002665.1 + 37749 0.68 0.986359
Target:  5'- -aCCCAugucagaggUCCAGUacCCAugauACUGGCAUCa -3'
miRNA:   3'- agGGGU---------AGGUUAa-GGUu---UGACUGUAG- -5'
10221 3' -48.1 NC_002665.1 + 101733 0.68 0.989422
Target:  5'- aUCUCCAUCCAuauaaagaCCAAugcacgcACUGugAUCu -3'
miRNA:   3'- -AGGGGUAGGUuaa-----GGUU-------UGACugUAG- -5'
10221 3' -48.1 NC_002665.1 + 89453 0.67 0.994202
Target:  5'- gCCCCAagccUCCAcaUCC-AGCUGAUAc- -3'
miRNA:   3'- aGGGGU----AGGUuaAGGuUUGACUGUag -5'
10221 3' -48.1 NC_002665.1 + 26067 0.67 0.995051
Target:  5'- aUCCCC-UCCA---CCAAACUGG-GUCu -3'
miRNA:   3'- -AGGGGuAGGUuaaGGUUUGACUgUAG- -5'
10221 3' -48.1 NC_002665.1 + 107807 0.67 0.995051
Target:  5'- cUCCUgGUCCAGagUgCAAGCUGACc-- -3'
miRNA:   3'- -AGGGgUAGGUUa-AgGUUUGACUGuag -5'
10221 3' -48.1 NC_002665.1 + 73817 0.67 0.990932
Target:  5'- aCCCCAUCCAaguauuuuuacuAUUCUuuGGgUGAUGUCu -3'
miRNA:   3'- aGGGGUAGGU------------UAAGGu-UUgACUGUAG- -5'
10221 3' -48.1 NC_002665.1 + 73619 0.66 0.997013
Target:  5'- cCCCCcUCCAGggCCA---UGACAUg -3'
miRNA:   3'- aGGGGuAGGUUaaGGUuugACUGUAg -5'
10221 3' -48.1 NC_002665.1 + 39555 0.66 0.996447
Target:  5'- aCCUCcUCUAAUauagCCAAugUGGCAUUu -3'
miRNA:   3'- aGGGGuAGGUUAa---GGUUugACUGUAG- -5'
10221 3' -48.1 NC_002665.1 + 97203 0.66 0.995796
Target:  5'- cCCCCAacaCCAAaacgUCCAcaaccGGCUGACAc- -3'
miRNA:   3'- aGGGGUa--GGUUa---AGGU-----UUGACUGUag -5'
10221 3' -48.1 NC_002665.1 + 65452 0.66 0.997922
Target:  5'- cCCCUAUCCAugUCCAAuauaUGGCu-- -3'
miRNA:   3'- aGGGGUAGGUuaAGGUUug--ACUGuag -5'
10221 3' -48.1 NC_002665.1 + 4743 0.66 0.997502
Target:  5'- gUCCCCAgugUCCAAguugu-GCUGACcUCa -3'
miRNA:   3'- -AGGGGU---AGGUUaagguuUGACUGuAG- -5'
10221 3' -48.1 NC_002665.1 + 17370 0.66 0.997065
Target:  5'- aUCCCCGUCCAGgggggguaUGGCAUg -3'
miRNA:   3'- -AGGGGUAGGUUaagguuugACUGUAg -5'
10221 3' -48.1 NC_002665.1 + 4437 0.66 0.997013
Target:  5'- cCCCCAcCCAGaUCCAuuGCgaaACAUCa -3'
miRNA:   3'- aGGGGUaGGUUaAGGUu-UGac-UGUAG- -5'
10221 3' -48.1 NC_002665.1 + 54237 0.66 0.99696
Target:  5'- gUCCCCGUCCAGUgggguucUCUAAguuuucuaucAUUGAUAa- -3'
miRNA:   3'- -AGGGGUAGGUUA-------AGGUU----------UGACUGUag -5'
10221 3' -48.1 NC_002665.1 + 88194 0.66 0.995796
Target:  5'- gCCUCAUCCAAUgggCCA--UUGAC-UCu -3'
miRNA:   3'- aGGGGUAGGUUAa--GGUuuGACUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.