miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10221 5' -50.2 NC_002665.1 + 14541 1.09 0.006132
Target:  5'- uGGGACUGUCCUUAAACUGCUUGGGAAg -3'
miRNA:   3'- -CCCUGACAGGAAUUUGACGAACCCUU- -5'
10221 5' -50.2 NC_002665.1 + 108512 0.72 0.804594
Target:  5'- uGGGACUGaaCUUUGAGCUGCacugUGGGc- -3'
miRNA:   3'- -CCCUGACa-GGAAUUUGACGa---ACCCuu -5'
10221 5' -50.2 NC_002665.1 + 89208 0.75 0.635837
Target:  5'- uGGGugUGUCUgu-AACUGCggGGGGGu -3'
miRNA:   3'- -CCCugACAGGaauUUGACGaaCCCUU- -5'
10221 5' -50.2 NC_002665.1 + 89252 0.69 0.934073
Target:  5'- gGGGGCUuggaGUCCUcgagaUGGuCUGUUUGGGGu -3'
miRNA:   3'- -CCCUGA----CAGGA-----AUUuGACGAACCCUu -5'
10221 5' -50.2 NC_002665.1 + 88485 0.68 0.948513
Target:  5'- gGGGuuUGUUCUUGGACuuguucaUGuCUUGGGAGg -3'
miRNA:   3'- -CCCugACAGGAAUUUG-------AC-GAACCCUU- -5'
10221 5' -50.2 NC_002665.1 + 8655 0.66 0.985948
Target:  5'- cGGGACUGUCCUcacagUAGGCaccagGCaaUGGaGAGu -3'
miRNA:   3'- -CCCUGACAGGA-----AUUUGa----CGa-ACC-CUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.