miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10222 3' -59.6 NC_002665.1 + 46269 0.7 0.406649
Target:  5'- -cGCCUGGCCCAuCCACUuauugggGUCAUCuCAa -3'
miRNA:   3'- guCGGAUCGGGU-GGUGGa------CGGUAG-GU- -5'
10222 3' -59.6 NC_002665.1 + 70060 0.66 0.610918
Target:  5'- uGGCCUGGCCaCACCAguaCUGUgGUUg- -3'
miRNA:   3'- gUCGGAUCGG-GUGGUg--GACGgUAGgu -5'
10222 3' -59.6 NC_002665.1 + 17734 1.08 0.000888
Target:  5'- aCAGCCUAGCCCACCACCUGCCAUCCAc -3'
miRNA:   3'- -GUCGGAUCGGGUGGUGGACGGUAGGU- -5'
10222 3' -59.6 NC_002665.1 + 10294 0.67 0.549305
Target:  5'- --aUCUAGCCCugACCACCccacCCAUCCAu -3'
miRNA:   3'- gucGGAUCGGG--UGGUGGac--GGUAGGU- -5'
10222 3' -59.6 NC_002665.1 + 93288 0.67 0.559467
Target:  5'- aCAGCCUAGUCCACaaacacaACCcagaugUGUCAUUCu -3'
miRNA:   3'- -GUCGGAUCGGGUGg------UGG------ACGGUAGGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.