miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10224 3' -53.5 NC_002665.1 + 15953 0.67 0.850148
Target:  5'- aUAGCCaCCUGGCuuuugGGCccCGGGAAUg -3'
miRNA:   3'- -AUUGG-GGACCGuga--UCGuuGUCCUUG- -5'
10224 3' -53.5 NC_002665.1 + 91618 0.67 0.850148
Target:  5'- aUGugUUCUGGCcCU-GCAGCAGaGAGCa -3'
miRNA:   3'- -AUugGGGACCGuGAuCGUUGUC-CUUG- -5'
10224 3' -53.5 NC_002665.1 + 22274 0.76 0.36675
Target:  5'- uUAACCCCUGGCACUAGUuacucuuGACAuGGuuuaAACu -3'
miRNA:   3'- -AUUGGGGACCGUGAUCG-------UUGU-CC----UUG- -5'
10224 3' -53.5 NC_002665.1 + 22251 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22228 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22205 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22182 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22159 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22136 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22113 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22090 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 22067 0.83 0.146002
Target:  5'- uUAACCCCUGGCACUAGUAGCAu---- -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUccuug -5'
10224 3' -53.5 NC_002665.1 + 21936 0.84 0.127253
Target:  5'- uUAACCUUUGGCACUGGUAGC-GGAACa -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGuCCUUG- -5'
10224 3' -53.5 NC_002665.1 + 41833 0.86 0.096273
Target:  5'- aAGCCUCUGGCACUGGU-AUAGGAGCa -3'
miRNA:   3'- aUUGGGGACCGUGAUCGuUGUCCUUG- -5'
10224 3' -53.5 NC_002665.1 + 21980 0.91 0.041987
Target:  5'- uUAACCCCUGuCAUUAGCAACAGGAACa -3'
miRNA:   3'- -AUUGGGGACcGUGAUCGUUGUCCUUG- -5'
10224 3' -53.5 NC_002665.1 + 21893 0.91 0.041987
Target:  5'- uUAACCCCUGuCAUUAGCAACAGGAACa -3'
miRNA:   3'- -AUUGGGGACcGUGAUCGUUGUCCUUG- -5'
10224 3' -53.5 NC_002665.1 + 22023 0.94 0.025596
Target:  5'- uUAACCUUUGGCACUGGUAGCAGGAACa -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUCCUUG- -5'
10224 3' -53.5 NC_002665.1 + 21848 1.09 0.002572
Target:  5'- uUAACCCCUGGCACUAGCAACAGGAACa -3'
miRNA:   3'- -AUUGGGGACCGUGAUCGUUGUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.