Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10224 | 3' | -53.5 | NC_002665.1 | + | 15953 | 0.67 | 0.850148 |
Target: 5'- aUAGCCaCCUGGCuuuugGGCccCGGGAAUg -3' miRNA: 3'- -AUUGG-GGACCGuga--UCGuuGUCCUUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 91618 | 0.67 | 0.850148 |
Target: 5'- aUGugUUCUGGCcCU-GCAGCAGaGAGCa -3' miRNA: 3'- -AUugGGGACCGuGAuCGUUGUC-CUUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22274 | 0.76 | 0.36675 |
Target: 5'- uUAACCCCUGGCACUAGUuacucuuGACAuGGuuuaAACu -3' miRNA: 3'- -AUUGGGGACCGUGAUCG-------UUGU-CC----UUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22159 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22251 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22228 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22205 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22182 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22136 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22113 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22090 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22067 | 0.83 | 0.146002 |
Target: 5'- uUAACCCCUGGCACUAGUAGCAu---- -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUccuug -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 21936 | 0.84 | 0.127253 |
Target: 5'- uUAACCUUUGGCACUGGUAGC-GGAACa -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGuCCUUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 41833 | 0.86 | 0.096273 |
Target: 5'- aAGCCUCUGGCACUGGU-AUAGGAGCa -3' miRNA: 3'- aUUGGGGACCGUGAUCGuUGUCCUUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 21980 | 0.91 | 0.041987 |
Target: 5'- uUAACCCCUGuCAUUAGCAACAGGAACa -3' miRNA: 3'- -AUUGGGGACcGUGAUCGUUGUCCUUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 21893 | 0.91 | 0.041987 |
Target: 5'- uUAACCCCUGuCAUUAGCAACAGGAACa -3' miRNA: 3'- -AUUGGGGACcGUGAUCGUUGUCCUUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 22023 | 0.94 | 0.025596 |
Target: 5'- uUAACCUUUGGCACUGGUAGCAGGAACa -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUCCUUG- -5' |
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10224 | 3' | -53.5 | NC_002665.1 | + | 21848 | 1.09 | 0.002572 |
Target: 5'- uUAACCCCUGGCACUAGCAACAGGAACa -3' miRNA: 3'- -AUUGGGGACCGUGAUCGUUGUCCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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