miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10225 5' -55.2 NC_002665.1 + 70200 0.66 0.903177
Target:  5'- gCCAGGGguCAUAaaaaucccaccuuuuGGGCCAC-UGUc-- -3'
miRNA:   3'- -GGUCCCguGUAU---------------CCCGGUGcACAacc -5'
10225 5' -55.2 NC_002665.1 + 32387 0.66 0.887091
Target:  5'- -uGGGGCGguaAGGGCCAUG-GUUGc -3'
miRNA:   3'- ggUCCCGUguaUCCCGGUGCaCAACc -5'
10225 5' -55.2 NC_002665.1 + 66803 0.66 0.872653
Target:  5'- gCCGGGGUAacaAUGGGauccCCugGgagugGUUGGg -3'
miRNA:   3'- -GGUCCCGUg--UAUCCc---GGugCa----CAACC- -5'
10225 5' -55.2 NC_002665.1 + 10102 0.67 0.849333
Target:  5'- uCUGGGGcCACGgguGuGGCCACGUGg--- -3'
miRNA:   3'- -GGUCCC-GUGUau-C-CCGGUGCACaacc -5'
10225 5' -55.2 NC_002665.1 + 82612 0.67 0.824172
Target:  5'- gUCAGGGguU--GGGGCuCAUGUGggUGGu -3'
miRNA:   3'- -GGUCCCguGuaUCCCG-GUGCACa-ACC- -5'
10225 5' -55.2 NC_002665.1 + 102532 0.68 0.797378
Target:  5'- -gAGGGCAUAUuuGGCCccCGUGgUGGg -3'
miRNA:   3'- ggUCCCGUGUAucCCGGu-GCACaACC- -5'
10225 5' -55.2 NC_002665.1 + 98602 0.68 0.797378
Target:  5'- aCCuGGGCAUgagcugugGUGGGGUgACaGUGggGGu -3'
miRNA:   3'- -GGuCCCGUG--------UAUCCCGgUG-CACaaCC- -5'
10225 5' -55.2 NC_002665.1 + 5986 0.69 0.729869
Target:  5'- uCUA-GGCACcaAUAGGGCCAUGUGg--- -3'
miRNA:   3'- -GGUcCCGUG--UAUCCCGGUGCACaacc -5'
10225 5' -55.2 NC_002665.1 + 77610 0.7 0.709643
Target:  5'- gCCAGGGgGaa-AGGGCCAUGgGUauUGGa -3'
miRNA:   3'- -GGUCCCgUguaUCCCGGUGCaCA--ACC- -5'
10225 5' -55.2 NC_002665.1 + 108621 0.7 0.67778
Target:  5'- cCCAGGGucagagggcugcuUugAUGGGGUCAgGaUGUUGGc -3'
miRNA:   3'- -GGUCCC-------------GugUAUCCCGGUgC-ACAACC- -5'
10225 5' -55.2 NC_002665.1 + 26048 0.72 0.584093
Target:  5'- -uGGGGUACGggGGGGCCACGcGUccaaaggUGGc -3'
miRNA:   3'- ggUCCCGUGUa-UCCCGGUGCaCA-------ACC- -5'
10225 5' -55.2 NC_002665.1 + 24816 1.13 0.001403
Target:  5'- cCCAGGGCACAUAGGGCCACGUGUUGGa -3'
miRNA:   3'- -GGUCCCGUGUAUCCCGGUGCACAACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.