Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10225 | 5' | -55.2 | NC_002665.1 | + | 108621 | 0.7 | 0.67778 |
Target: 5'- cCCAGGGucagagggcugcuUugAUGGGGUCAgGaUGUUGGc -3' miRNA: 3'- -GGUCCC-------------GugUAUCCCGGUgC-ACAACC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 102532 | 0.68 | 0.797378 |
Target: 5'- -gAGGGCAUAUuuGGCCccCGUGgUGGg -3' miRNA: 3'- ggUCCCGUGUAucCCGGu-GCACaACC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 98602 | 0.68 | 0.797378 |
Target: 5'- aCCuGGGCAUgagcugugGUGGGGUgACaGUGggGGu -3' miRNA: 3'- -GGuCCCGUG--------UAUCCCGgUG-CACaaCC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 82612 | 0.67 | 0.824172 |
Target: 5'- gUCAGGGguU--GGGGCuCAUGUGggUGGu -3' miRNA: 3'- -GGUCCCguGuaUCCCG-GUGCACa-ACC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 77610 | 0.7 | 0.709643 |
Target: 5'- gCCAGGGgGaa-AGGGCCAUGgGUauUGGa -3' miRNA: 3'- -GGUCCCgUguaUCCCGGUGCaCA--ACC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 70200 | 0.66 | 0.903177 |
Target: 5'- gCCAGGGguCAUAaaaaucccaccuuuuGGGCCAC-UGUc-- -3' miRNA: 3'- -GGUCCCguGUAU---------------CCCGGUGcACAacc -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 66803 | 0.66 | 0.872653 |
Target: 5'- gCCGGGGUAacaAUGGGauccCCugGgagugGUUGGg -3' miRNA: 3'- -GGUCCCGUg--UAUCCc---GGugCa----CAACC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 32387 | 0.66 | 0.887091 |
Target: 5'- -uGGGGCGguaAGGGCCAUG-GUUGc -3' miRNA: 3'- ggUCCCGUguaUCCCGGUGCaCAACc -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 26048 | 0.72 | 0.584093 |
Target: 5'- -uGGGGUACGggGGGGCCACGcGUccaaaggUGGc -3' miRNA: 3'- ggUCCCGUGUa-UCCCGGUGCaCA-------ACC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 24816 | 1.13 | 0.001403 |
Target: 5'- cCCAGGGCACAUAGGGCCACGUGUUGGa -3' miRNA: 3'- -GGUCCCGUGUAUCCCGGUGCACAACC- -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 10102 | 0.67 | 0.849333 |
Target: 5'- uCUGGGGcCACGgguGuGGCCACGUGg--- -3' miRNA: 3'- -GGUCCC-GUGUau-C-CCGGUGCACaacc -5' |
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10225 | 5' | -55.2 | NC_002665.1 | + | 5986 | 0.69 | 0.729869 |
Target: 5'- uCUA-GGCACcaAUAGGGCCAUGUGg--- -3' miRNA: 3'- -GGUcCCGUG--UAUCCCGGUGCACaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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