Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10226 | 3' | -63.5 | NC_002665.1 | + | 15972 | 0.66 | 0.514836 |
Target: 5'- uGAUaacugUGGCgcccugaUAGCCAccuGGCUuuugGGCCCCGGg -3' miRNA: 3'- gCUG-----ACCG-------GUCGGU---UCGG----CCGGGGCC- -5' |
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10226 | 3' | -63.5 | NC_002665.1 | + | 46321 | 0.67 | 0.460385 |
Target: 5'- uGAUUGGCCAGUgGAaacaCCGGUCCUa- -3' miRNA: 3'- gCUGACCGGUCGgUUc---GGCCGGGGcc -5' |
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10226 | 3' | -63.5 | NC_002665.1 | + | 107776 | 0.69 | 0.352413 |
Target: 5'- ---aUGGCCAGU--AGuuGGUCCCGGu -3' miRNA: 3'- gcugACCGGUCGguUCggCCGGGGCC- -5' |
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10226 | 3' | -63.5 | NC_002665.1 | + | 28620 | 0.69 | 0.352413 |
Target: 5'- aGugUgccggGGCCGGCUuGGCUGGCCaguCGGg -3' miRNA: 3'- gCugA-----CCGGUCGGuUCGGCCGGg--GCC- -5' |
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10226 | 3' | -63.5 | NC_002665.1 | + | 71561 | 0.74 | 0.171688 |
Target: 5'- -uGCUugGGCCauauAGCUGAGCUGGUCCCGGg -3' miRNA: 3'- gcUGA--CCGG----UCGGUUCGGCCGGGGCC- -5' |
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10226 | 3' | -63.5 | NC_002665.1 | + | 105108 | 0.76 | 0.109471 |
Target: 5'- uCGACUGGUgGGUUAGGUggUGGCCCUGGg -3' miRNA: 3'- -GCUGACCGgUCGGUUCG--GCCGGGGCC- -5' |
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10226 | 3' | -63.5 | NC_002665.1 | + | 28480 | 1.09 | 0.000461 |
Target: 5'- cCGACUGGCCAGCCAAGCCGGCCCCGGc -3' miRNA: 3'- -GCUGACCGGUCGGUUCGGCCGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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