miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10227 3' -52.6 NC_002665.1 + 83544 0.66 0.944973
Target:  5'- gGCCCCCCUA----AGggGUucauAGGAg -3'
miRNA:   3'- -CGGGGGGGUacauUCuuCGuu--UCCUa -5'
10227 3' -52.6 NC_002665.1 + 32355 0.66 0.923959
Target:  5'- cGCCCCCcaacagccaCCGUGUccuAGAAGCAAAa--- -3'
miRNA:   3'- -CGGGGG---------GGUACAu--UCUUCGUUUccua -5'
10227 3' -52.6 NC_002665.1 + 101183 0.67 0.905372
Target:  5'- gGUCCUCCCAUGUu--GGGCAuuuGGAa -3'
miRNA:   3'- -CGGGGGGGUACAuucUUCGUuu-CCUa -5'
10227 3' -52.6 NC_002665.1 + 26898 0.67 0.891655
Target:  5'- uGCCCCCCUA-GUcaAGGAuucAGCAuaccAGGAg -3'
miRNA:   3'- -CGGGGGGGUaCA--UUCU---UCGUu---UCCUa -5'
10227 3' -52.6 NC_002665.1 + 105194 0.68 0.869163
Target:  5'- uCCCCCCCAacucauggaauaUG-AAGAAcCAGGGGAUg -3'
miRNA:   3'- cGGGGGGGU------------ACaUUCUUcGUUUCCUA- -5'
10227 3' -52.6 NC_002665.1 + 52517 0.68 0.851286
Target:  5'- gGUCCCCCCuggucuucuuauUGgcAGGuuuuuuacaAGCAGAGGAUg -3'
miRNA:   3'- -CGGGGGGGu-----------ACauUCU---------UCGUUUCCUA- -5'
10227 3' -52.6 NC_002665.1 + 100894 0.69 0.799196
Target:  5'- uGCCCgCCaCGUGUGAGuuGGCAGuuGGAUu -3'
miRNA:   3'- -CGGGgGG-GUACAUUCu-UCGUUu-CCUA- -5'
10227 3' -52.6 NC_002665.1 + 102330 0.73 0.582366
Target:  5'- cCUCCCCCAuggguauacugucacUGgcAGAAGUAAAGGAg -3'
miRNA:   3'- cGGGGGGGU---------------ACauUCUUCGUUUCCUa -5'
10227 3' -52.6 NC_002665.1 + 64654 0.75 0.503168
Target:  5'- uGCCCCCCCGg--GGGAauuguccAGUAGAGGAc -3'
miRNA:   3'- -CGGGGGGGUacaUUCU-------UCGUUUCCUa -5'
10227 3' -52.6 NC_002665.1 + 64814 1.08 0.003738
Target:  5'- uGCCCCCCCAUGUAAGAAGCAAAGGAUg -3'
miRNA:   3'- -CGGGGGGGUACAUUCUUCGUUUCCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.