Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10227 | 3' | -52.6 | NC_002665.1 | + | 83544 | 0.66 | 0.944973 |
Target: 5'- gGCCCCCCUA----AGggGUucauAGGAg -3' miRNA: 3'- -CGGGGGGGUacauUCuuCGuu--UCCUa -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 32355 | 0.66 | 0.923959 |
Target: 5'- cGCCCCCcaacagccaCCGUGUccuAGAAGCAAAa--- -3' miRNA: 3'- -CGGGGG---------GGUACAu--UCUUCGUUUccua -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 101183 | 0.67 | 0.905372 |
Target: 5'- gGUCCUCCCAUGUu--GGGCAuuuGGAa -3' miRNA: 3'- -CGGGGGGGUACAuucUUCGUuu-CCUa -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 26898 | 0.67 | 0.891655 |
Target: 5'- uGCCCCCCUA-GUcaAGGAuucAGCAuaccAGGAg -3' miRNA: 3'- -CGGGGGGGUaCA--UUCU---UCGUu---UCCUa -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 105194 | 0.68 | 0.869163 |
Target: 5'- uCCCCCCCAacucauggaauaUG-AAGAAcCAGGGGAUg -3' miRNA: 3'- cGGGGGGGU------------ACaUUCUUcGUUUCCUA- -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 52517 | 0.68 | 0.851286 |
Target: 5'- gGUCCCCCCuggucuucuuauUGgcAGGuuuuuuacaAGCAGAGGAUg -3' miRNA: 3'- -CGGGGGGGu-----------ACauUCU---------UCGUUUCCUA- -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 100894 | 0.69 | 0.799196 |
Target: 5'- uGCCCgCCaCGUGUGAGuuGGCAGuuGGAUu -3' miRNA: 3'- -CGGGgGG-GUACAUUCu-UCGUUu-CCUA- -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 102330 | 0.73 | 0.582366 |
Target: 5'- cCUCCCCCAuggguauacugucacUGgcAGAAGUAAAGGAg -3' miRNA: 3'- cGGGGGGGU---------------ACauUCUUCGUUUCCUa -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 64654 | 0.75 | 0.503168 |
Target: 5'- uGCCCCCCCGg--GGGAauuguccAGUAGAGGAc -3' miRNA: 3'- -CGGGGGGGUacaUUCU-------UCGUUUCCUa -5' |
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10227 | 3' | -52.6 | NC_002665.1 | + | 64814 | 1.08 | 0.003738 |
Target: 5'- uGCCCCCCCAUGUAAGAAGCAAAGGAUg -3' miRNA: 3'- -CGGGGGGGUACAUUCUUCGUUUCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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