miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1023 3' -53.4 NC_000924.1 + 32692 0.66 0.834151
Target:  5'- cCACCAggUUACUGAUAGCCacGCCuGa -3'
miRNA:   3'- cGUGGU--AGUGACUGUCGGaaUGGcCa -5'
1023 3' -53.4 NC_000924.1 + 16314 0.67 0.796493
Target:  5'- gGCACCAUCaguuGCUGcgGCGGCUgaaaaauggaACCGGa -3'
miRNA:   3'- -CGUGGUAG----UGAC--UGUCGGaa--------UGGCCa -5'
1023 3' -53.4 NC_000924.1 + 24885 0.67 0.786613
Target:  5'- gGCAUa--CGCUGGCuuuccGCUUUGCCGGg -3'
miRNA:   3'- -CGUGguaGUGACUGu----CGGAAUGGCCa -5'
1023 3' -53.4 NC_000924.1 + 26844 0.67 0.776569
Target:  5'- aGC-CCAcagaaaggCACcGACAGCCaaACCGGUa -3'
miRNA:   3'- -CGuGGUa-------GUGaCUGUCGGaaUGGCCA- -5'
1023 3' -53.4 NC_000924.1 + 19575 0.67 0.776569
Target:  5'- aGCACCAcCACUGAUuugAGaa-UGCCGGg -3'
miRNA:   3'- -CGUGGUaGUGACUG---UCggaAUGGCCa -5'
1023 3' -53.4 NC_000924.1 + 37991 0.67 0.776569
Target:  5'- uUACCcugacggCGCUGACAGUUUcACCGGa -3'
miRNA:   3'- cGUGGua-----GUGACUGUCGGAaUGGCCa -5'
1023 3' -53.4 NC_000924.1 + 15359 0.68 0.734986
Target:  5'- cGUGCCAUUuuaGCUG-CGGCCUgauuuaUGCUGGUu -3'
miRNA:   3'- -CGUGGUAG---UGACuGUCGGA------AUGGCCA- -5'
1023 3' -53.4 NC_000924.1 + 24958 0.68 0.707004
Target:  5'- aCACCGUucaCGCUGACGcagucaccggucaguGCCUUugCGGc -3'
miRNA:   3'- cGUGGUA---GUGACUGU---------------CGGAAugGCCa -5'
1023 3' -53.4 NC_000924.1 + 30190 0.69 0.680721
Target:  5'- uGCAuUCAUCAgaGACGGCauuaagcgUACCGGUu -3'
miRNA:   3'- -CGU-GGUAGUgaCUGUCGga------AUGGCCA- -5'
1023 3' -53.4 NC_000924.1 + 42378 0.69 0.636386
Target:  5'- aUACCAUCAcCUGcCAGUUUUGcCCGGUu -3'
miRNA:   3'- cGUGGUAGU-GACuGUCGGAAU-GGCCA- -5'
1023 3' -53.4 NC_000924.1 + 52329 0.7 0.624154
Target:  5'- aGCACCGUCACcggaUGACAaaauccGCUuugacguUUACCGGa -3'
miRNA:   3'- -CGUGGUAGUG----ACUGU------CGG-------AAUGGCCa -5'
1023 3' -53.4 NC_000924.1 + 39636 0.72 0.502184
Target:  5'- cGCACCuguuucuccuuucgGUCcCUGugGGCC-UGCCGGg -3'
miRNA:   3'- -CGUGG--------------UAGuGACugUCGGaAUGGCCa -5'
1023 3' -53.4 NC_000924.1 + 35436 0.73 0.424593
Target:  5'- -aACCAUCAuCUGGuucCAGuCCUUACCGGa -3'
miRNA:   3'- cgUGGUAGU-GACU---GUC-GGAAUGGCCa -5'
1023 3' -53.4 NC_000924.1 + 49525 1.09 0.001716
Target:  5'- gGCACCAUCACUGACAGCCUUACCGGUu -3'
miRNA:   3'- -CGUGGUAGUGACUGUCGGAAUGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.