miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10230 5' -45.8 NC_002665.1 + 4733 0.66 0.999554
Target:  5'- aGUGGCUGGAguccccagUGUCCaAGUUGugcUGACc- -3'
miRNA:   3'- aUACUGACCU--------AUAGG-UCAAU---ACUGug -5'
10230 5' -45.8 NC_002665.1 + 41331 0.66 0.999554
Target:  5'- -uUGACUGGcacuuaAUGuUCCAGUguugagGGCACa -3'
miRNA:   3'- auACUGACC------UAU-AGGUCAaua---CUGUG- -5'
10230 5' -45.8 NC_002665.1 + 36315 0.68 0.998343
Target:  5'- --gGugUGGAgucUCCAGUUAUG-CAg -3'
miRNA:   3'- auaCugACCUau-AGGUCAAUACuGUg -5'
10230 5' -45.8 NC_002665.1 + 15222 0.68 0.997069
Target:  5'- --aGAuCUGGAUGaCCAGauccucaucuuUUGUGGCACa -3'
miRNA:   3'- auaCU-GACCUAUaGGUC-----------AAUACUGUG- -5'
10230 5' -45.8 NC_002665.1 + 93502 0.69 0.995833
Target:  5'- cAUGAaaaUGGAUGUCCAGcauaugggGGCAUa -3'
miRNA:   3'- aUACUg--ACCUAUAGGUCaaua----CUGUG- -5'
10230 5' -45.8 NC_002665.1 + 24900 0.7 0.989407
Target:  5'- --aGGCUGGGUAaCCAGgUGUGAaGCa -3'
miRNA:   3'- auaCUGACCUAUaGGUCaAUACUgUG- -5'
10230 5' -45.8 NC_002665.1 + 86305 0.7 0.987825
Target:  5'- gUGUGucauaACUGGAUAUCCAGUcaUAcUGGgGCg -3'
miRNA:   3'- -AUAC-----UGACCUAUAGGUCA--AU-ACUgUG- -5'
10230 5' -45.8 NC_002665.1 + 86169 1.1 0.014319
Target:  5'- gUAUGACUGGAUAUCCAGUUAUGACACa -3'
miRNA:   3'- -AUACUGACCUAUAGGUCAAUACUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.