miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10231 5' -47.6 NC_002665.1 + 97091 0.66 0.999154
Target:  5'- aCCaUCGAUCugAUCCcuaGAUGGGUau-GCa -3'
miRNA:   3'- -GG-AGUUAGugUAGG---UUACCUAgucCG- -5'
10231 5' -47.6 NC_002665.1 + 42345 0.66 0.999154
Target:  5'- cCUUCA---AUAUCCucuacGUGGAUgAGGCa -3'
miRNA:   3'- -GGAGUuagUGUAGGu----UACCUAgUCCG- -5'
10231 5' -47.6 NC_002665.1 + 65165 0.66 0.999154
Target:  5'- aCCUgGAUgGgcCcUCCAAUGGGUCAuuGGUa -3'
miRNA:   3'- -GGAgUUAgU--GuAGGUUACCUAGU--CCG- -5'
10231 5' -47.6 NC_002665.1 + 29456 0.67 0.998115
Target:  5'- ------aCACGUCCAGUaGAUUGGGCu -3'
miRNA:   3'- ggaguuaGUGUAGGUUAcCUAGUCCG- -5'
10231 5' -47.6 NC_002665.1 + 11856 0.67 0.997731
Target:  5'- aCCUCAGUgACAguuuaCAgaggGUGGuccCAGGCa -3'
miRNA:   3'- -GGAGUUAgUGUag---GU----UACCua-GUCCG- -5'
10231 5' -47.6 NC_002665.1 + 4587 0.68 0.994697
Target:  5'- uUCUCAcAUCACuuugauguuUCgCAAUGGAUCuGGGUg -3'
miRNA:   3'- -GGAGU-UAGUGu--------AG-GUUACCUAG-UCCG- -5'
10231 5' -47.6 NC_002665.1 + 55089 0.68 0.992587
Target:  5'- uCC-CAGU-ACGUCCccccauucagGGAUCAGGCu -3'
miRNA:   3'- -GGaGUUAgUGUAGGuua-------CCUAGUCCG- -5'
10231 5' -47.6 NC_002665.1 + 68408 0.71 0.960858
Target:  5'- uCCUgGGUCACAUCCAucuugAUGGcAUU-GGCc -3'
miRNA:   3'- -GGAgUUAGUGUAGGU-----UACC-UAGuCCG- -5'
10231 5' -47.6 NC_002665.1 + 87966 0.72 0.95272
Target:  5'- aCCUCG---GCGUCUggUGGGUaUAGGCc -3'
miRNA:   3'- -GGAGUuagUGUAGGuuACCUA-GUCCG- -5'
10231 5' -47.6 NC_002665.1 + 59226 0.72 0.948253
Target:  5'- uCCUCAAagccggGCGUCUugGGUGGGUCAGGa -3'
miRNA:   3'- -GGAGUUag----UGUAGG--UUACCUAGUCCg -5'
10231 5' -47.6 NC_002665.1 + 67884 0.75 0.830924
Target:  5'- -aUCAAgcccaGCAUCCAAUGGAUauugGGGCa -3'
miRNA:   3'- ggAGUUag---UGUAGGUUACCUAg---UCCG- -5'
10231 5' -47.6 NC_002665.1 + 87864 1.15 0.005896
Target:  5'- uCCUCAAUCACAUCCAAUGGAUCAGGCu -3'
miRNA:   3'- -GGAGUUAGUGUAGGUUACCUAGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.