Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10233 | 5' | -54 | NC_002665.1 | + | 107198 | 1.11 | 0.002121 |
Target: 5'- cCCAUCCCAUGAAGAUGGCUGGGUGGAa -3' miRNA: 3'- -GGUAGGGUACUUCUACCGACCCACCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 100050 | 0.67 | 0.889104 |
Target: 5'- -gAUCCgGgagacGAGGGUGGCUgcugggacuccugGGGUGGGg -3' miRNA: 3'- ggUAGGgUa----CUUCUACCGA-------------CCCACCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 89856 | 0.72 | 0.605037 |
Target: 5'- uUCAUUCCGUGcucuuaAAGAUGGUUGGGUcGAu -3' miRNA: 3'- -GGUAGGGUAC------UUCUACCGACCCAcCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 81204 | 0.74 | 0.531979 |
Target: 5'- --uUUCCAUGggGGguuugagaugGGUUGGGUGGAc -3' miRNA: 3'- gguAGGGUACuuCUa---------CCGACCCACCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 71538 | 0.67 | 0.875316 |
Target: 5'- -gGUCCCggGcuGGUGaGCUGGGUGa- -3' miRNA: 3'- ggUAGGGuaCuuCUAC-CGACCCACcu -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 66907 | 0.67 | 0.867718 |
Target: 5'- uCCAggucUUCCAUGGu--UGGCUGGGccuUGGGa -3' miRNA: 3'- -GGU----AGGGUACUucuACCGACCC---ACCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 58209 | 0.66 | 0.921713 |
Target: 5'- uCC-UCCCAguuaauuuugGAAGAUauGCUGGuGUGGAg -3' miRNA: 3'- -GGuAGGGUa---------CUUCUAc-CGACC-CACCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 37055 | 0.66 | 0.903322 |
Target: 5'- uCCAUCgCCAaGGAGGUGuaUGGGUa-- -3' miRNA: 3'- -GGUAG-GGUaCUUCUACcgACCCAccu -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 32674 | 0.68 | 0.851848 |
Target: 5'- uCC-UCCCAcaauaaGAaaAGAUGGUggGGGUGGGa -3' miRNA: 3'- -GGuAGGGUa-----CU--UCUACCGa-CCCACCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 25779 | 0.72 | 0.64742 |
Target: 5'- --uUCCCAUcaguGAUGGCcucUGGGUGGAu -3' miRNA: 3'- gguAGGGUAcuu-CUACCG---ACCCACCU- -5' |
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10233 | 5' | -54 | NC_002665.1 | + | 19751 | 0.7 | 0.750103 |
Target: 5'- uUCAUUgCugguuuuauagguAUGggGAcaauauUGGCUGGGUGGAu -3' miRNA: 3'- -GGUAGgG-------------UACuuCU------ACCGACCCACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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