miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10242 5' -63 NC_002686.1 + 123322 0.66 0.560667
Target:  5'- -aUCCUCGCGGG-GGCCGuGGugCcCGa -3'
miRNA:   3'- ccGGGAGCGUCCaCCGGC-UCugGcGC- -5'
10242 5' -63 NC_002686.1 + 104832 0.66 0.560667
Target:  5'- -aUCCUCGCGGG-GGCCGuGGugCcCGa -3'
miRNA:   3'- ccGGGAGCGUCCaCCGGC-UCugGcGC- -5'
10242 5' -63 NC_002686.1 + 122359 0.66 0.541451
Target:  5'- uGGCCUUUGCGGG-GGCCGucgaauaucuGGGCUccagGCu -3'
miRNA:   3'- -CCGGGAGCGUCCaCCGGC----------UCUGG----CGc -5'
10242 5' -63 NC_002686.1 + 105796 0.66 0.541451
Target:  5'- uGGCCUUUGCGGG-GGCCGucgaauaucuGGGCUccagGCu -3'
miRNA:   3'- -CCGGGAGCGUCCaCCGGC----------UCUGG----CGc -5'
10242 5' -63 NC_002686.1 + 123771 0.66 0.531925
Target:  5'- gGGgCCggGUGGaGUGGgCGGGGCCGCu -3'
miRNA:   3'- -CCgGGagCGUC-CACCgGCUCUGGCGc -5'
10242 5' -63 NC_002686.1 + 104383 0.66 0.531925
Target:  5'- gGGgCCggGUGGaGUGGgCGGGGCCGCu -3'
miRNA:   3'- -CCgGGagCGUC-CACCgGCUCUGGCGc -5'
10242 5' -63 NC_002686.1 + 121716 0.7 0.336708
Target:  5'- cGGCCC-CGCuguuaAGGcGGCCaaGAGACgCGCGu -3'
miRNA:   3'- -CCGGGaGCG-----UCCaCCGG--CUCUG-GCGC- -5'
10242 5' -63 NC_002686.1 + 106439 0.7 0.336708
Target:  5'- cGGCCC-CGCuguuaAGGcGGCCaaGAGACgCGCGu -3'
miRNA:   3'- -CCGGGaGCG-----UCCaCCGG--CUCUG-GCGC- -5'
10242 5' -63 NC_002686.1 + 122918 0.76 0.152505
Target:  5'- aGGCCCggcagCGCGGGU--CCGAGACCGUc -3'
miRNA:   3'- -CCGGGa----GCGUCCAccGGCUCUGGCGc -5'
10242 5' -63 NC_002686.1 + 105236 0.76 0.152505
Target:  5'- aGGCCCggcagCGCGGGU--CCGAGACCGUc -3'
miRNA:   3'- -CCGGGa----GCGUCCAccGGCUCUGGCGc -5'
10242 5' -63 NC_002686.1 + 123324 1.11 0.00045
Target:  5'- cGGCCCUCGCAGGUGGCCGAGACCGCGg -3'
miRNA:   3'- -CCGGGAGCGUCCACCGGCUCUGGCGC- -5'
10242 5' -63 NC_002686.1 + 104831 1.11 0.00045
Target:  5'- cGGCCCUCGCAGGUGGCCGAGACCGCGg -3'
miRNA:   3'- -CCGGGAGCGUCCACCGGCUCUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.