miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10243 3' -57.9 NC_002686.1 + 115 0.66 0.781343
Target:  5'- cCGG-CCCGCCAUUuccgUCGCGccauGU-CCGCg -3'
miRNA:   3'- uGCCuGGGCGGUAG----AGCGU----CAuGGUG- -5'
10243 3' -57.9 NC_002686.1 + 105301 0.66 0.772
Target:  5'- aGCGGaACCCGCguUCgaggccccgCGCgAGuUGCCACc -3'
miRNA:   3'- -UGCC-UGGGCGguAGa--------GCG-UC-AUGGUG- -5'
10243 3' -57.9 NC_002686.1 + 122854 0.66 0.772
Target:  5'- aGCGGaACCCGCguUCgaggccccgCGCgAGuUGCCACc -3'
miRNA:   3'- -UGCC-UGGGCGguAGa--------GCG-UC-AUGGUG- -5'
10243 3' -57.9 NC_002686.1 + 50150 0.68 0.683377
Target:  5'- cUGGAaaCGCCAUCUCGUuaacACCACc -3'
miRNA:   3'- uGCCUggGCGGUAGAGCGuca-UGGUG- -5'
10243 3' -57.9 NC_002686.1 + 123347 0.68 0.673195
Target:  5'- cGCGGcGCCCGUCG-CUC-CAGUgaaggGCCGCg -3'
miRNA:   3'- -UGCC-UGGGCGGUaGAGcGUCA-----UGGUG- -5'
10243 3' -57.9 NC_002686.1 + 104808 0.68 0.673195
Target:  5'- cGCGGcGCCCGUCG-CUC-CAGUgaaggGCCGCg -3'
miRNA:   3'- -UGCC-UGGGCGGUaGAGcGUCA-----UGGUG- -5'
10243 3' -57.9 NC_002686.1 + 104673 0.68 0.642482
Target:  5'- gACGGGCgCCGCgGUCUCG----GCCACc -3'
miRNA:   3'- -UGCCUG-GGCGgUAGAGCgucaUGGUG- -5'
10243 3' -57.9 NC_002686.1 + 123482 0.68 0.642482
Target:  5'- gACGGGCgCCGCgGUCUCG----GCCACc -3'
miRNA:   3'- -UGCCUG-GGCGgUAGAGCgucaUGGUG- -5'
10243 3' -57.9 NC_002686.1 + 122460 1.1 0.001341
Target:  5'- gACGGACCCGCCAUCUCGCAGUACCACg -3'
miRNA:   3'- -UGCCUGGGCGGUAGAGCGUCAUGGUG- -5'
10243 3' -57.9 NC_002686.1 + 105695 1.1 0.001341
Target:  5'- gACGGACCCGCCAUCUCGCAGUACCACg -3'
miRNA:   3'- -UGCCUGGGCGGUAGAGCGUCAUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.