miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10244 3' -62.2 NC_002686.1 + 121423 1.11 0.000445
Target:  5'- cUGUGGGCCCUUCCACACGCCGCCGCCg -3'
miRNA:   3'- -ACACCCGGGAAGGUGUGCGGCGGCGG- -5'
10244 3' -62.2 NC_002686.1 + 106732 1.11 0.000445
Target:  5'- cUGUGGGCCCUUCCACACGCCGCCGCCg -3'
miRNA:   3'- -ACACCCGGGAAGGUGUGCGGCGGCGG- -5'
10244 3' -62.2 NC_002686.1 + 123438 0.75 0.164593
Target:  5'- --cGGGCCCgg-CGCACgGCCGCgCGCCg -3'
miRNA:   3'- acaCCCGGGaagGUGUG-CGGCG-GCGG- -5'
10244 3' -62.2 NC_002686.1 + 104717 0.75 0.164593
Target:  5'- --cGGGCCCgg-CGCACgGCCGCgCGCCg -3'
miRNA:   3'- acaCCCGGGaagGUGUG-CGGCG-GCGG- -5'
10244 3' -62.2 NC_002686.1 + 121931 0.67 0.510296
Target:  5'- gGUGGacgaGCCCauguUUCCACcgGCGUgGCgGCCg -3'
miRNA:   3'- aCACC----CGGG----AAGGUG--UGCGgCGgCGG- -5'
10244 3' -62.2 NC_002686.1 + 106223 0.67 0.510296
Target:  5'- gGUGGacgaGCCCauguUUCCACcgGCGUgGCgGCCg -3'
miRNA:   3'- aCACC----CGGG----AAGGUG--UGCGgCGgCGG- -5'
10244 3' -62.2 NC_002686.1 + 104654 0.66 0.577977
Target:  5'- --cGcGGCCCUUCacuggagcgaCGgGCGCCGCgGUCu -3'
miRNA:   3'- acaC-CCGGGAAG----------GUgUGCGGCGgCGG- -5'
10244 3' -62.2 NC_002686.1 + 123501 0.66 0.577977
Target:  5'- --cGcGGCCCUUCacuggagcgaCGgGCGCCGCgGUCu -3'
miRNA:   3'- acaC-CCGGGAAG----------GUgUGCGGCGgCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.