Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10245 | 3' | -54.6 | NC_002686.1 | + | 107147 | 0.66 | 0.915597 |
Target: 5'- gGUCGUGGuuUCuuuugugUGGGGUCUACAUCu -3' miRNA: 3'- gCGGUGCCu-AGua-----GCCCCAGAUGUAG- -5' |
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10245 | 3' | -54.6 | NC_002686.1 | + | 121008 | 0.66 | 0.915597 |
Target: 5'- gGUCGUGGuuUCuuuugugUGGGGUCUACAUCu -3' miRNA: 3'- gCGGUGCCu-AGua-----GCCCCAGAUGUAG- -5' |
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10245 | 3' | -54.6 | NC_002686.1 | + | 105912 | 0.7 | 0.744162 |
Target: 5'- aGCCGCacAUCuUCGGGGUCUGCc-- -3' miRNA: 3'- gCGGUGccUAGuAGCCCCAGAUGuag -5' |
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10245 | 3' | -54.6 | NC_002686.1 | + | 122242 | 0.7 | 0.744162 |
Target: 5'- aGCCGCacAUCuUCGGGGUCUGCc-- -3' miRNA: 3'- gCGGUGccUAGuAGCCCCAGAUGuag -5' |
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10245 | 3' | -54.6 | NC_002686.1 | + | 123372 | 0.74 | 0.52844 |
Target: 5'- gGCCGCGGGugcccggcucgUCGUaCGGGGUgcGCAUCg -3' miRNA: 3'- gCGGUGCCU-----------AGUA-GCCCCAgaUGUAG- -5' |
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10245 | 3' | -54.6 | NC_002686.1 | + | 104783 | 0.74 | 0.52844 |
Target: 5'- gGCCGCGGGugcccggcucgUCGUaCGGGGUgcGCAUCg -3' miRNA: 3'- gCGGUGCCU-----------AGUA-GCCCCAgaUGUAG- -5' |
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10245 | 3' | -54.6 | NC_002686.1 | + | 120816 | 1.11 | 0.00238 |
Target: 5'- aCGCCACGGAUCAUCGGGGUCUACAUCg -3' miRNA: 3'- -GCGGUGCCUAGUAGCCCCAGAUGUAG- -5' |
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10245 | 3' | -54.6 | NC_002686.1 | + | 107338 | 1.11 | 0.00238 |
Target: 5'- aCGCCACGGAUCAUCGGGGUCUACAUCg -3' miRNA: 3'- -GCGGUGCCUAGUAGCCCCAGAUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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