Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10246 | 5' | -53.3 | NC_002686.1 | + | 76597 | 0.66 | 0.92713 |
Target: 5'- ---uUGGGGACGCAUuGGGAacaaAGGCAa -3' miRNA: 3'- uucuACUCCUGUGUG-CCCUg---UUCGUc -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 123804 | 0.67 | 0.915494 |
Target: 5'- ----gGGGGGC-CGCGGGugGcuGGCGGa -3' miRNA: 3'- uucuaCUCCUGuGUGCCCugU--UCGUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 104350 | 0.67 | 0.915494 |
Target: 5'- ----gGGGGGC-CGCGGGugGcuGGCGGa -3' miRNA: 3'- uucuaCUCCUGuGUGCCCugU--UCGUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 107273 | 0.67 | 0.909286 |
Target: 5'- gAGGAUGAGGACG-ACGauGACGAGgAGg -3' miRNA: 3'- -UUCUACUCCUGUgUGCc-CUGUUCgUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 122773 | 0.67 | 0.909286 |
Target: 5'- cGGGUGuaAGGACAuCGCGaGACAGGCGc -3' miRNA: 3'- uUCUAC--UCCUGU-GUGCcCUGUUCGUc -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 105381 | 0.67 | 0.909286 |
Target: 5'- cGGGUGuaAGGACAuCGCGaGACAGGCGc -3' miRNA: 3'- uUCUAC--UCCUGU-GUGCcCUGUUCGUc -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 120882 | 0.67 | 0.909286 |
Target: 5'- gAGGAUGAGGACG-ACGauGACGAGgAGg -3' miRNA: 3'- -UUCUACUCCUGUgUGCc-CUGUUCgUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 20307 | 0.68 | 0.84981 |
Target: 5'- -uGAUGAGGACgcgucguauguauACACGGcGACAaacGGUGGa -3' miRNA: 3'- uuCUACUCCUG-------------UGUGCC-CUGU---UCGUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 123700 | 0.74 | 0.568933 |
Target: 5'- cGGGGUGggagaGGGACACACggaGGGAgGGGCGGg -3' miRNA: 3'- -UUCUAC-----UCCUGUGUG---CCCUgUUCGUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 104455 | 0.74 | 0.568933 |
Target: 5'- cGGGGUGggagaGGGACACACggaGGGAgGGGCGGg -3' miRNA: 3'- -UUCUAC-----UCCUGUGUG---CCCUgUUCGUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 121654 | 0.74 | 0.536464 |
Target: 5'- gAGGGUGAgaggagcGGACugGCGGGACA-GCAa -3' miRNA: 3'- -UUCUACU-------CCUGugUGCCCUGUuCGUc -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 106501 | 0.74 | 0.536464 |
Target: 5'- gAGGGUGAgaggagcGGACugGCGGGACA-GCAa -3' miRNA: 3'- -UUCUACU-------CCUGugUGCCCUGUuCGUc -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 120763 | 1.08 | 0.004321 |
Target: 5'- gAAGAUGAGGACACACGGGACAAGCAGg -3' miRNA: 3'- -UUCUACUCCUGUGUGCCCUGUUCGUC- -5' |
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10246 | 5' | -53.3 | NC_002686.1 | + | 107391 | 1.08 | 0.004321 |
Target: 5'- gAAGAUGAGGACACACGGGACAAGCAGg -3' miRNA: 3'- -UUCUACUCCUGUGUGCCCUGUUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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