miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10246 5' -53.3 NC_002686.1 + 76597 0.66 0.92713
Target:  5'- ---uUGGGGACGCAUuGGGAacaaAGGCAa -3'
miRNA:   3'- uucuACUCCUGUGUG-CCCUg---UUCGUc -5'
10246 5' -53.3 NC_002686.1 + 104350 0.67 0.915494
Target:  5'- ----gGGGGGC-CGCGGGugGcuGGCGGa -3'
miRNA:   3'- uucuaCUCCUGuGUGCCCugU--UCGUC- -5'
10246 5' -53.3 NC_002686.1 + 123804 0.67 0.915494
Target:  5'- ----gGGGGGC-CGCGGGugGcuGGCGGa -3'
miRNA:   3'- uucuaCUCCUGuGUGCCCugU--UCGUC- -5'
10246 5' -53.3 NC_002686.1 + 107273 0.67 0.909286
Target:  5'- gAGGAUGAGGACG-ACGauGACGAGgAGg -3'
miRNA:   3'- -UUCUACUCCUGUgUGCc-CUGUUCgUC- -5'
10246 5' -53.3 NC_002686.1 + 122773 0.67 0.909286
Target:  5'- cGGGUGuaAGGACAuCGCGaGACAGGCGc -3'
miRNA:   3'- uUCUAC--UCCUGU-GUGCcCUGUUCGUc -5'
10246 5' -53.3 NC_002686.1 + 105381 0.67 0.909286
Target:  5'- cGGGUGuaAGGACAuCGCGaGACAGGCGc -3'
miRNA:   3'- uUCUAC--UCCUGU-GUGCcCUGUUCGUc -5'
10246 5' -53.3 NC_002686.1 + 120882 0.67 0.909286
Target:  5'- gAGGAUGAGGACG-ACGauGACGAGgAGg -3'
miRNA:   3'- -UUCUACUCCUGUgUGCc-CUGUUCgUC- -5'
10246 5' -53.3 NC_002686.1 + 20307 0.68 0.84981
Target:  5'- -uGAUGAGGACgcgucguauguauACACGGcGACAaacGGUGGa -3'
miRNA:   3'- uuCUACUCCUG-------------UGUGCC-CUGU---UCGUC- -5'
10246 5' -53.3 NC_002686.1 + 123700 0.74 0.568933
Target:  5'- cGGGGUGggagaGGGACACACggaGGGAgGGGCGGg -3'
miRNA:   3'- -UUCUAC-----UCCUGUGUG---CCCUgUUCGUC- -5'
10246 5' -53.3 NC_002686.1 + 104455 0.74 0.568933
Target:  5'- cGGGGUGggagaGGGACACACggaGGGAgGGGCGGg -3'
miRNA:   3'- -UUCUAC-----UCCUGUGUG---CCCUgUUCGUC- -5'
10246 5' -53.3 NC_002686.1 + 106501 0.74 0.536464
Target:  5'- gAGGGUGAgaggagcGGACugGCGGGACA-GCAa -3'
miRNA:   3'- -UUCUACU-------CCUGugUGCCCUGUuCGUc -5'
10246 5' -53.3 NC_002686.1 + 121654 0.74 0.536464
Target:  5'- gAGGGUGAgaggagcGGACugGCGGGACA-GCAa -3'
miRNA:   3'- -UUCUACU-------CCUGugUGCCCUGUuCGUc -5'
10246 5' -53.3 NC_002686.1 + 120763 1.08 0.004321
Target:  5'- gAAGAUGAGGACACACGGGACAAGCAGg -3'
miRNA:   3'- -UUCUACUCCUGUGUGCCCUGUUCGUC- -5'
10246 5' -53.3 NC_002686.1 + 107391 1.08 0.004321
Target:  5'- gAAGAUGAGGACACACGGGACAAGCAGg -3'
miRNA:   3'- -UUCUACUCCUGUGUGCCCUGUUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.