Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10248 | 5' | -65.5 | NC_002686.1 | + | 120153 | 1.08 | 0.000508 |
Target: 5'- gCGACCCACGGGCCCCGAGGUCCCCGGc -3' miRNA: 3'- -GCUGGGUGCCCGGGGCUCCAGGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 108002 | 1.08 | 0.000508 |
Target: 5'- gCGACCCACGGGCCCCGAGGUCCCCGGc -3' miRNA: 3'- -GCUGGGUGCCCGGGGCUCCAGGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 104163 | 0.72 | 0.222465 |
Target: 5'- gGACCCGggagaGGGCCggggggggCCGGGGaccCCCCGGg -3' miRNA: 3'- gCUGGGUg----CCCGG--------GGCUCCa--GGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 120648 | 0.7 | 0.266335 |
Target: 5'- uGuuCCACGGGUCCCG-GGUUCCUa- -3' miRNA: 3'- gCugGGUGCCCGGGGCuCCAGGGGcc -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 107507 | 0.7 | 0.266335 |
Target: 5'- uGuuCCACGGGUCCCG-GGUUCCUa- -3' miRNA: 3'- gCugGGUGCCCGGGGCuCCAGGGGcc -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 104979 | 0.69 | 0.355023 |
Target: 5'- gGGCaCCACGGcCCCCGcgaggaugacggugaAGGcgcagCCCCGGg -3' miRNA: 3'- gCUG-GGUGCCcGGGGC---------------UCCa----GGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 123176 | 0.69 | 0.355023 |
Target: 5'- gGGCaCCACGGcCCCCGcgaggaugacggugaAGGcgcagCCCCGGg -3' miRNA: 3'- gCUG-GGUGCCcGGGGC---------------UCCa----GGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 122709 | 0.68 | 0.359448 |
Target: 5'- gGGCCUcgaacGCGGGUUCCGcuGUCCCCa- -3' miRNA: 3'- gCUGGG-----UGCCCGGGGCucCAGGGGcc -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 105446 | 0.68 | 0.359448 |
Target: 5'- gGGCCUcgaacGCGGGUUCCGcuGUCCCCa- -3' miRNA: 3'- gCUGGG-----UGCCCGGGGCucCAGGGGcc -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 107942 | 0.68 | 0.366907 |
Target: 5'- cCGAUCCACGcacaCCaAGGUCCCCGGc -3' miRNA: 3'- -GCUGGGUGCccggGGcUCCAGGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 120213 | 0.68 | 0.366907 |
Target: 5'- cCGAUCCACGcacaCCaAGGUCCCCGGc -3' miRNA: 3'- -GCUGGGUGCccggGGcUCCAGGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 121561 | 0.67 | 0.413851 |
Target: 5'- gGGCagagugCACGGGCCgCGGuagcGG-CCCCGGa -3' miRNA: 3'- gCUGg-----GUGCCCGGgGCU----CCaGGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 104470 | 0.67 | 0.413851 |
Target: 5'- -cACCCAcCGGGCgccCCCGGGGggCUCCGc -3' miRNA: 3'- gcUGGGU-GCCCG---GGGCUCCa-GGGGCc -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 123685 | 0.67 | 0.413851 |
Target: 5'- -cACCCAcCGGGCgccCCCGGGGggCUCCGc -3' miRNA: 3'- gcUGGGU-GCCCG---GGGCUCCa-GGGGCc -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 106594 | 0.67 | 0.413851 |
Target: 5'- gGGCagagugCACGGGCCgCGGuagcGG-CCCCGGa -3' miRNA: 3'- gCUGg-----GUGCCCGGgGCU----CCaGGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 107856 | 0.67 | 0.422028 |
Target: 5'- gGACCU-CGGGgCCCGuGGGUCgCuuGGu -3' miRNA: 3'- gCUGGGuGCCCgGGGC-UCCAG-GggCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 120298 | 0.67 | 0.422028 |
Target: 5'- gGACCU-CGGGgCCCGuGGGUCgCuuGGu -3' miRNA: 3'- gCUGGGuGCCCgGGGC-UCCAG-GggCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 123061 | 0.67 | 0.430301 |
Target: 5'- gGACCCGCGcugccGGgCCUGcGGcCCUCGGg -3' miRNA: 3'- gCUGGGUGC-----CCgGGGCuCCaGGGGCC- -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 92375 | 0.67 | 0.430301 |
Target: 5'- aCGGCUUugGGaugGCCCUGGGGaUCCCGu -3' miRNA: 3'- -GCUGGGugCC---CGGGGCUCCaGGGGCc -5' |
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10248 | 5' | -65.5 | NC_002686.1 | + | 105094 | 0.67 | 0.430301 |
Target: 5'- gGACCCGCGcugccGGgCCUGcGGcCCUCGGg -3' miRNA: 3'- gCUGGGUGC-----CCgGGGCuCCaGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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