miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10249 5' -55 NC_002686.1 + 121744 0.65 0.897062
Target:  5'- cGCGCGUcGGcuCAGUAAcCGCCUCuGGg -3'
miRNA:   3'- uUGCGUAaCCu-GUCGUU-GCGGAG-CCa -5'
10249 5' -55 NC_002686.1 + 123517 0.67 0.834701
Target:  5'- aGGCGCggUGGGCgaAGCGgagccccccggggGCGCC-CGGUg -3'
miRNA:   3'- -UUGCGuaACCUG--UCGU-------------UGCGGaGCCA- -5'
10249 5' -55 NC_002686.1 + 104638 0.67 0.834701
Target:  5'- aGGCGCggUGGGCgaAGCGgagccccccggggGCGCC-CGGUg -3'
miRNA:   3'- -UUGCGuaACCUG--UCGU-------------UGCGGaGCCA- -5'
10249 5' -55 NC_002686.1 + 48662 0.79 0.241926
Target:  5'- uACGCcUUGGGCAGUAACGCCUUGa- -3'
miRNA:   3'- uUGCGuAACCUGUCGUUGCGGAGCca -5'
10249 5' -55 NC_002686.1 + 110435 1.06 0.003986
Target:  5'- aAACGCAUUGGACAGCAACGCCUCGGUa -3'
miRNA:   3'- -UUGCGUAACCUGUCGUUGCGGAGCCA- -5'
10249 5' -55 NC_002686.1 + 117720 1.06 0.003986
Target:  5'- aAACGCAUUGGACAGCAACGCCUCGGUa -3'
miRNA:   3'- -UUGCGUAACCUGUCGUUGCGGAGCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.